FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHESM (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-4) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 56/186 (30.11%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  139 IVGRTGSGKSTLIQTLFRIVEPA-AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +VGR+GSGKST+   + R      +                  R++++++ Q   +F  T+ +N+      E T EQI +A       + + +    LD++V ENG   S GQRQ + + R +L+   +L+LDEAT+++DT ++  IQQ L     + T + IAHR++++  +D +L++  G I E
Sbjct:  392 LVGRSGSGKSTIASLVTRFYTGLESGDIKLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQAATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVE 577          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPK (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas putida (strain KT2440) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 64/219 (29.22%), Postives = 102/219 (46.58%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G++++R+L   Y      VL  IS      +   +VGR+GSGKSTL   + R                        R  +S + Q   +F  TV +N+    L       I  A       + V +     D++V ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++  IQ +L       T + IAHR++++  +D +L++  G + E
Sbjct:  353 GRLEVRNLSFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIEKADQILVMDQGRLVE 571          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MAM1_SCHPO (Mating factor M secretion protein mam1 OS=Schizosaccharomyces pombe GN=mam1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 57/197 (28.93%), Postives = 96/197 (48.73%), Query Frame = 1
Query:   88 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKK-EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675
            F L  +S   P  +   I+G +GSGKST I  L R   P                     + ++++ Q PV+F+ T+R N+    E   E  +E + +  L DE     +   D+   E   + S GQ+Q + L R LL+  +IL+LDE T+++D  T NL+  ++R H    T + I H ++ + + ++VL++  G
Sbjct:  450 FSLINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRENIIMRNENASESDFEEVCRLALVDEFALTFDQSYDTPCKE--ASLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKG 644          

HSP 2 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 56/226 (24.78%), Postives = 115/226 (50.88%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRY--APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +P  GKI+   +   Y  +      L  +S +    +K  IVG +GSGKSTL++ L R   P+                   + +++I+ Q P +   T+  ++    +     + +ALDK  + + ++     LD+ + E  +N+S GQ Q +   R LL+  ++L+LDE T+++D+ +  L++++++     CTV+ I H+ + +  +D ++++  G+++E  S
Sbjct: 1093 FPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSGKSTLVE-LLRKTYPSEDIYIDGYPLTNIDTNWLLK-KVAIVDQKPHLLGSTILESLLYGVDRDINSVMDALDKTYMTEVIQNLPNGLDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQN--LSCTVLIITHQPSLMKLADRIIVMDSGIVKESGS 1314          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y664_HAEIN (Probable ABC transporter ATP-binding protein HI0664 OS=Haemophilus influenzae GN=HI0664 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 57/213 (26.76%), Postives = 105/213 (49.30%), Query Frame = 1
Query:   40 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675
            +ID+ ++   Y      +L  +S +    +  GI GR+GSGKSTL++ L R  +P +                  R  ++ I Q   +F  T+  N+     + T E+I EA  K  + D +        +K+TE G N S G++Q + + R  L    I++LDE T+++D+  + +I +SL    ++  +I ++HR +++   D V+ + +G
Sbjct:  339 RIDVENVNFAYGEEQ--ILSDVSLSVKKGEILGIHGRSGSGKSTLLKLLMRFYDPKSGSIKINGETLPNINTCSLRDNMAYITQQTYIFNETIEENIRLARRDATLEEIMEAAKKASIHDFILSLPQGYQTKMTELGGNLSDGEKQRIGIARAFLHNAPIILLDEPTSNLDSLNEAMILKSLLNVKAEKLIILVSHRQSTMAICDQVIGIENG 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1384_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1384 OS=Mycobacterium bovis GN=Mb1384 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 61/218 (27.98%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   40 KIDLRDLQVRYAPHMPFVLRGIS-CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +I+  D+   Y      VL G+S C  PG   T IVG +G GKST++  +  + +P                    +   S++ Q P +F GT+R NV   +   +D+Q  +A+   ++ + + +     ++ V E G   S G+RQ V + R LLK   +L++DEAT+++D   +  +  +L       T + +AHR+ S+  +D VL +  G + E
Sbjct:  331 RIEFDDVAFGYDGGSGPVLDGVSFCLQPGTT-TAIVGPSGCGKSTILALIAGLHQPTRGRVLIDGTDVATLDARAQQAVCSVVFQHPYLFHGTIRDNVFAADPGASDDQFAQAVRLARVDELIARLPDGANTIVGEAGSALSGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVE 547          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1349_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1349/MT1392 OS=Mycobacterium tuberculosis GN=Rv1349 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 61/218 (27.98%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   40 KIDLRDLQVRYAPHMPFVLRGIS-CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +I+  D+   Y      VL G+S C  PG   T IVG +G GKST++  +  + +P                    +   S++ Q P +F GT+R NV   +   +D+Q  +A+   ++ + + +     ++ V E G   S G+RQ V + R LLK   +L++DEAT+++D   +  +  +L       T + +AHR+ S+  +D VL +  G + E
Sbjct:  331 RIEFDDVAFGYDGGSGPVLDGVSFCLQPGTT-TAIVGPSGCGKSTILALIAGLHQPTRGRVLIDGTDVATLDARAQQAVCSVVFQHPYLFHGTIRDNVFAADPGASDDQFAQAVRLARVDELIARLPDGANTIVGEAGSALSGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVE 547          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB20B_ARATH (ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 59/222 (26.58%), Postives = 108/222 (48.65%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL-RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            +G I+L+++   Y P  P   VL   S    G +   +VG +GSGKST+I  + R  +P A                  R+ + ++ Q+P++F  T+R N+        E ++ EA         +       D+ +   G   + GQ+Q + + RV+LK   I+++DEA++S+++ +  ++Q++L      + T I IAHR   +   D +++L+ G I E
Sbjct: 1156 YGSIELKNVDFCY-PTRPEILVLSNFSLKISGGQTVAVVGVSGSGKSTIISLVERYYDPVAGQVLLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPIILIDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVE 1376          

HSP 2 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 54/219 (24.66%), Postives = 103/219 (47.03%), Query Frame = 1
Query:   37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G I+ R++   Y   P +P +L G   T P +K   +VGR GSGKS++I  + R  +P                    R+++ ++ Q+P +   ++R N+    + T +QI EA         +   E   +++V   G   +  Q+  + + R +L    IL+LDE T  +D   + ++Q++L       + I IA R++ + ++D + ++  G + E
Sbjct:  412 GNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRENIAYGRDATLDQIEEAAKNAHAHTFISSLEKGYETQVGRAGLAMTEEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERIVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVE 629          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP2 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain HaA2) GN=ndvA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 60/231 (25.97%), Postives = 110/231 (47.62%), Query Frame = 1
Query:    4 KSRPNHSWPSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            + RPN   P    G ++ +D+   Y    P V        PG+    +VG TG+GKST I  L R  +P +                  R  + ++ Q+ ++F+ ++  N+   + + TD ++  A ++ Q  D + +     ++   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR++++  +  +L+  +G + E
Sbjct:  330 RDRPNAIDPGRLSGLVEFQDVSFSYDGKRPAVEDLSFTALPGQT-IALVGATGAGKSTAIALLHRAFDPQSGTVKIDGMDIRGLTLAGLRRNIGVVFQEALLFDRSIADNLRVGKPDATDAELRLAAERAQALDFIERSGLGFNTAAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMRGRTTFVIAHRLSTIRHATRILVFENGRVIE 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_NITHX (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ndvA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 55/218 (25.23%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++  D+   Y    P V        PG+    +VG TG+GKST +  L R  +P +                  R  + ++ Q+ ++F+ ++  N+   + + ++E++  A  + Q    + + + K D+   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR++++ ++  +L+  +G + E
Sbjct:  343 GLVEFHDVSFSYDGKRPAVEDLSFVALPGQT-IALVGPTGAGKSTAVALLHRAFDPQSGIIKIDGMDIRGLTLASLRRNIGVVFQEALLFDRSIAENLRVGKPDASEEEMRLAASRAQALGFIERADRKFDTHAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNAALDEVMKGRTTFVIAHRLSTIRNATRILVFENGRVIE 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSE14 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msbA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 62/219 (28.31%), Postives = 104/219 (47.49%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G +++++L   Y      VL  IS +    +   +VGR+GSGKSTL   + R                        R  ++ + Q+  +F  T+ +N+    L       I  A       + + +     D++V ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++  IQ +L       T + IAHR++++  +DM+L++  G I E
Sbjct:  351 GHLEVKNLSFFYPQTERQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHEMGNILLDGVEINDYRLRNLRKHIAQVNQNVTLFNDTIANNIAYGDLAGAPRADIEAAAADAYAKEFIDQLPQGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGQIVE 569          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_SHESM2.688e-1730.11Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEPK2.688e-1729.22Lipid A export ATP-binding/permease protein msbA O... [more]
MAM1_SCHPO2.688e-1728.93Mating factor M secretion protein mam1 OS=Schizosa... [more]
Y664_HAEIN3.511e-1726.76Probable ABC transporter ATP-binding protein HI066... [more]
Y1384_MYCBO4.585e-1727.98Uncharacterized ABC transporter ATP-binding protei... [more]
Y1349_MYCTU4.585e-1727.98Uncharacterized ABC transporter ATP-binding protei... [more]
AB20B_ARATH4.585e-1726.58ABC transporter B family member 20 OS=Arabidopsis ... [more]
NDVA_RHOP27.822e-1725.97Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_NITHX7.822e-1725.23Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_PSE147.822e-1728.31Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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