FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHESM (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-4) GN=msbA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17 Identity = 56/186 (30.11%), Postives = 98/186 (52.69%), Query Frame = 1 Query: 139 IVGRTGSGKSTLIQTLFRIVEPA-AXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +VGR+GSGKST+ + R + R++++++ Q +F T+ +N+ E T EQI +A + + + LD++V ENG S GQRQ + + R +L+ +L+LDEAT+++DT ++ IQQ L + T + IAHR++++ +D +L++ G I E Sbjct: 392 LVGRSGSGKSTIASLVTRFYTGLESGDIKLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQAATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVE 577
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPK (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas putida (strain KT2440) GN=msbA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17 Identity = 64/219 (29.22%), Postives = 102/219 (46.58%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G++++R+L Y VL IS + +VGR+GSGKSTL + R R +S + Q +F TV +N+ L I A + V + D++V ENG S GQRQ + + R LLK +L+LDEAT+++DT ++ IQ +L T + IAHR++++ +D +L++ G + E Sbjct: 353 GRLEVRNLSFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIEKADQILVMDQGRLVE 571
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MAM1_SCHPO (Mating factor M secretion protein mam1 OS=Schizosaccharomyces pombe GN=mam1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17 Identity = 57/197 (28.93%), Postives = 96/197 (48.73%), Query Frame = 1 Query: 88 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKK-EGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675 F L +S P + I+G +GSGKST I L R P + ++++ Q PV+F+ T+R N+ E E +E + + L DE + D+ E + S GQ+Q + L R LL+ +IL+LDE T+++D T NL+ ++R H T + I H ++ + + ++VL++ G Sbjct: 450 FSLINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRENIIMRNENASESDFEEVCRLALVDEFALTFDQSYDTPCKE--ASLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKG 644 HSP 2 Score: 83.9593 bits (206), Expect = 8.648e-16 Identity = 56/226 (24.78%), Postives = 115/226 (50.88%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRY--APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 +P GKI+ + Y + L +S + +K IVG +GSGKSTL++ L R P+ + +++I+ Q P + T+ ++ + + +ALDK + + ++ LD+ + E +N+S GQ Q + R LL+ ++L+LDE T+++D+ + L++++++ CTV+ I H+ + + +D ++++ G+++E S Sbjct: 1093 FPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSGKSTLVE-LLRKTYPSEDIYIDGYPLTNIDTNWLLK-KVAIVDQKPHLLGSTILESLLYGVDRDINSVMDALDKTYMTEVIQNLPNGLDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQN--LSCTVLIITHQPSLMKLADRIIVMDSGIVKESGS 1314
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y664_HAEIN (Probable ABC transporter ATP-binding protein HI0664 OS=Haemophilus influenzae GN=HI0664 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17 Identity = 57/213 (26.76%), Postives = 105/213 (49.30%), Query Frame = 1 Query: 40 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG 675 +ID+ ++ Y +L +S + + GI GR+GSGKSTL++ L R +P + R ++ I Q +F T+ N+ + T E+I EA K + D + +K+TE G N S G++Q + + R L I++LDE T+++D+ + +I +SL ++ +I ++HR +++ D V+ + +G Sbjct: 339 RIDVENVNFAYGEEQ--ILSDVSLSVKKGEILGIHGRSGSGKSTLLKLLMRFYDPKSGSIKINGETLPNINTCSLRDNMAYITQQTYIFNETIEENIRLARRDATLEEIMEAAKKASIHDFILSLPQGYQTKMTELGGNLSDGEKQRIGIARAFLHNAPIILLDEPTSNLDSLNEAMILKSLLNVKAEKLIILVSHRQSTMAICDQVIGIENG 549
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1384_MYCBO (Uncharacterized ABC transporter ATP-binding protein Mb1384 OS=Mycobacterium bovis GN=Mb1384 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17 Identity = 61/218 (27.98%), Postives = 106/218 (48.62%), Query Frame = 1 Query: 40 KIDLRDLQVRYAPHMPFVLRGIS-CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +I+ D+ Y VL G+S C PG T IVG +G GKST++ + + +P + S++ Q P +F GT+R NV + +D+Q +A+ ++ + + + ++ V E G S G+RQ V + R LLK +L++DEAT+++D + + +L T + +AHR+ S+ +D VL + G + E Sbjct: 331 RIEFDDVAFGYDGGSGPVLDGVSFCLQPGTT-TAIVGPSGCGKSTILALIAGLHQPTRGRVLIDGTDVATLDARAQQAVCSVVFQHPYLFHGTIRDNVFAADPGASDDQFAQAVRLARVDELIARLPDGANTIVGEAGSALSGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVE 547
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1349_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1349/MT1392 OS=Mycobacterium tuberculosis GN=Rv1349 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17 Identity = 61/218 (27.98%), Postives = 106/218 (48.62%), Query Frame = 1 Query: 40 KIDLRDLQVRYAPHMPFVLRGIS-CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEE-YTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +I+ D+ Y VL G+S C PG T IVG +G GKST++ + + +P + S++ Q P +F GT+R NV + +D+Q +A+ ++ + + + ++ V E G S G+RQ V + R LLK +L++DEAT+++D + + +L T + +AHR+ S+ +D VL + G + E Sbjct: 331 RIEFDDVAFGYDGGSGPVLDGVSFCLQPGTT-TAIVGPSGCGKSTILALIAGLHQPTRGRVLIDGTDVATLDARAQQAVCSVVFQHPYLFHGTIRDNVFAADPGASDDQFAQAVRLARVDELIARLPDGANTIVGEAGSALSGGERQRVSIARALLKAAPVLLVDEATSALDAENEAAVVDALAADPRSRTRVIVAHRLASIRHADRVLFVDDGRVVE 547
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB20B_ARATH (ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17 Identity = 59/222 (26.58%), Postives = 108/222 (48.65%), Query Frame = 1 Query: 34 HGKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL-RQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 +G I+L+++ Y P P VL S G + +VG +GSGKST+I + R +P A R+ + ++ Q+P++F T+R N+ E ++ EA + D+ + G + GQ+Q + + RV+LK I+++DEA++S+++ + ++Q++L + T I IAHR + D +++L+ G I E Sbjct: 1156 YGSIELKNVDFCY-PTRPEILVLSNFSLKISGGQTVAVVGVSGSGKSTIISLVERYYDPVAGQVLLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPIILIDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVE 1376 HSP 2 Score: 85.1149 bits (209), Expect = 3.882e-16 Identity = 54/219 (24.66%), Postives = 103/219 (47.03%), Query Frame = 1 Query: 37 GKIDLRDLQVRYA--PHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G I+ R++ Y P +P +L G T P +K +VGR GSGKS++I + R +P R+++ ++ Q+P + ++R N+ + T +QI EA + E +++V G + Q+ + + R +L IL+LDE T +D + ++Q++L + I IA R++ + ++D + ++ G + E Sbjct: 412 GNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRENIAYGRDATLDQIEEAAKNAHAHTFISSLEKGYETQVGRAGLAMTEEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERIVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVE 629
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP2 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain HaA2) GN=ndvA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17 Identity = 60/231 (25.97%), Postives = 110/231 (47.62%), Query Frame = 1 Query: 4 KSRPNHSWPSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 + RPN P G ++ +D+ Y P V PG+ +VG TG+GKST I L R +P + R + ++ Q+ ++F+ ++ N+ + + TD ++ A ++ Q D + + ++ E G S G+RQ + + R LLK IL+LDEAT+++D T+ + +L + T IAHR++++ + +L+ +G + E Sbjct: 330 RDRPNAIDPGRLSGLVEFQDVSFSYDGKRPAVEDLSFTALPGQT-IALVGATGAGKSTAIALLHRAFDPQSGTVKIDGMDIRGLTLAGLRRNIGVVFQEALLFDRSIADNLRVGKPDATDAELRLAAERAQALDFIERSGLGFNTAAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMRGRTTFVIAHRLSTIRHATRILVFENGRVIE 559
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_NITHX (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ndvA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17 Identity = 55/218 (25.23%), Postives = 106/218 (48.62%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G ++ D+ Y P V PG+ +VG TG+GKST + L R +P + R + ++ Q+ ++F+ ++ N+ + + ++E++ A + Q + + + K D+ E G S G+RQ + + R LLK IL+LDEAT+++D T+ + +L + T IAHR++++ ++ +L+ +G + E Sbjct: 343 GLVEFHDVSFSYDGKRPAVEDLSFVALPGQT-IALVGPTGAGKSTAVALLHRAFDPQSGIIKIDGMDIRGLTLASLRRNIGVVFQEALLFDRSIAENLRVGKPDASEEEMRLAASRAQALGFIERADRKFDTHAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNAALDEVMKGRTTFVIAHRLSTIRNATRILVFENGRVIE 559
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSE14 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msbA PE=3 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17 Identity = 62/219 (28.31%), Postives = 104/219 (47.49%), Query Frame = 1 Query: 37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687 G +++++L Y VL IS + + +VGR+GSGKSTL + R R ++ + Q+ +F T+ +N+ L I A + + + D++V ENG S GQRQ + + R LLK +L+LDEAT+++DT ++ IQ +L T + IAHR++++ +DM+L++ G I E Sbjct: 351 GHLEVKNLSFFYPQTERQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHEMGNILLDGVEINDYRLRNLRKHIAQVNQNVTLFNDTIANNIAYGDLAGAPRADIEAAAADAYAKEFIDQLPQGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGQIVE 569 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |