FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLA_BUCBP (Multidrug resistance-like ATP-binding protein mdlA OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=mdlA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 58/219 (26.48%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATD-NLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++++    +Y+     +L+ I+      +  GI G TGSGKSTL++ + R +E                     R ++SI+ Q   +F  T+ +N+   + Y  + +I +A     L +++       +++V E G   S GQ+Q + + R LL + +IL+LD A +SVD  T+ N+++       +  T+I   HR++S+I+SD+++++ +G I +
Sbjct:  334 GILEVKINYFKYSKSNKTILKNINFKIRPGQILGICGPTGSGKSTLLKLIQRQIELYDGKISYHSIPITQFNIVEWRKKMSIVNQTTFLFSDTIANNIKLGKPYASQKEIEQATTFSDLHNDIMTFPQGYNTQVGERGIMLSGGQKQRISIARALLLKSEILILDNALSSVDNKTEINILENLKTWKKNKNTIIMCTHRLSSLINSDLIIVIENGSITQ 552          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MCHF_ECOLX (Probable microcin-H47 secretion/processing ATP-binding protein mchF OS=Escherichia coli GN=mchF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 53/207 (25.60%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQ-IWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVL 660
            ++  DL  RY      V  G++ +    +   I G +G+GK+TL++ L  + EP +                     ++ + QD  +F G++R N+    E TD++ + E      + D + K     ++ + E GE  S GQ+Q + + R L ++  IL +DEAT+S+DT ++  +  ++++   + T + IAHR T++   D ++
Sbjct:  492 LETTDLSYRYDSQSAQVFSGLNLSVAPGESVAITGASGAGKTTLMKVLCGLFEPDSGKVLVNGTDIRQLGINNYHRMIACVMQDDRLFSGSIRENICGFAEETDDEWMTECARASHIHDVIMKMPMGYETLIGELGEGLSGGQKQRIFIARALYRKPGILFMDEATSSLDTESERFVNAAIKK--MNITRVIIAHRETTLRTVDRII 696          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_RHOPS (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisB5) GN=ndvA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 59/231 (25.54%), Postives = 109/231 (47.19%), Query Frame = 1
Query:    4 KSRPNHSWPSH--GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            + RP+   P    G ++  D+   Y    P +        PG+    +VG TG+GKST I  L R  +P +                  R  + ++ Q+ ++F  ++  N+   + + TD ++  A ++ Q  D + + +   D+   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR++++  +  +L+  +G + E
Sbjct:  330 RDRPDAIDPGRLSGLVEFLDVSFSYDGKRPAIEDLSFTALPGQT-IALVGATGAGKSTAIALLHRAFDPQSGVVKIDGMDVRGLTMSGLRRNIGVVFQEALLFNRSIAENLRVGKPDATDAELRLAAERAQALDFIDRNDLGFDTNAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFDNGKVIE 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSEU2 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 61/219 (27.85%), Postives = 104/219 (47.49%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G +++++L   Y      VL  IS +    +   +VGR+GSGKSTL   + R                        R  ++ + Q+  +F  T+ +N+    L       I  A       + + +     D++V ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++  IQ +L       T + IAHR++++  +D++L++  G I E
Sbjct:  351 GHLEVKNLSFFYPQTARQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHDIGNILLDGVEINDYRLRNLRRHIAQVNQNVTLFNDTIANNIAYGDLAGAPRADIEAAAADAYAREFIDQLPQGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADLILVMDAGQIVE 569          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: SUNT_BPSPC (Sublancin-168-processing and transport ATP-binding protein sunT OS=Bacillus phage SPBc2 GN=sunT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 54/205 (26.34%), Postives = 100/205 (48.78%), Query Frame = 1
Query:   73 APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            A  M +++  I+     + K  I+G +G+GKST  ++L ++ +                     R R+  I ++P +F+GT++ N+   E +   +I  A    Q  + +   + +   K++ENG N S GQ+Q + L R +L + ++L+LDE+ +++D     LI ++L  H  DC +I I H   S    +  L+  +  I E
Sbjct:  492 ADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL--HRMDCLIILITHNDPSNFKYNKKLVFRNNRIIE 694          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: SUNT_BACSU (SPBc2 prophage-derived sublancin-168-processing and transport ATP-binding protein sunT OS=Bacillus subtilis GN=sunT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 54/205 (26.34%), Postives = 100/205 (48.78%), Query Frame = 1
Query:   73 APHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            A  M +++  I+     + K  I+G +G+GKST  ++L ++ +                     R R+  I ++P +F+GT++ N+   E +   +I  A    Q  + +   + +   K++ENG N S GQ+Q + L R +L + ++L+LDE+ +++D     LI ++L  H  DC +I I H   S    +  L+  +  I E
Sbjct:  492 ADPMRYIVEDINLILDRKDKVLIIGESGTGKSTFAKSLSKLYKVPDKSIYLNGLDINRYDHLSIRKRIVYIDENPFLFKGTIKENLCMGEIFDQNEIENACIMSQCHEFICNLDKQYSYKLSENGSNLSTGQKQRLALARAILHQPQVLILDESLSNIDPDNTKLIYETL--HRMDCLIILITHNDPSNFKYNKKLVFRNNRIIE 694          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_PSESM (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. tomato GN=msbA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 61/219 (27.85%), Postives = 104/219 (47.49%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G +++++L   Y      VL  IS +    +   +VGR+GSGKSTL   + R                        R  ++ + Q+  +F  ++ +N+    L       I  A       + + +     D++V ENG   S GQRQ + + R LLK   +L+LDEAT+++DT ++  IQ +L       T + IAHR++++  +DM+L++  G I E
Sbjct:  351 GHLEVKNLSFFYPQTERQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHEMGNILLDGVEINDYRLRNLRKHIAQVNQNVTLFNDSIANNIAYGDLAGAPRADIEAAAADAYAKEFIDQLPQGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGKIVE 569          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MCJD_ECOLX (Microcin-J25 export ATP-binding/permease protein mcjD OS=Escherichia coli GN=mcjD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 60/215 (27.91%), Postives = 105/215 (48.84%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEY--TDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            + +R+L   Y+     +L  +S      K   + G +GSGKSTL++ +    +                        +  + QD  +F  T+R N+  L  Y  ++ +I++ L    L   V  +   LD+ +   G N+S GQ+Q + L R+ L++  I+++DEAT+++D   ++ I  S+R HF D  +I I+HRI  +  SD V +L+ G I
Sbjct:  345 LSIRELSFSYSDDKK-ILNSVSLDLFTGKMYSLTGPSGSGKSTLVKIISGYYKNYFGDIYLNDISLRNISDEDLNDAIYYLTQDDYIFMDTLRFNLR-LANYDASENEIFKVLKLANLS-VVNNEPVSLDTHLINRGNNYSGGQKQRISLARLFLRKPAIIIIDEATSALDYINESEILSSIRTHFPDALIINISHRINLLECSDCVYVLNEGNI 556          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_DECAR (Lipid A export ATP-binding/permease protein msbA OS=Dechloromonas aromatica (strain RCB) GN=msbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 57/216 (26.39%), Postives = 104/216 (48.15%), Query Frame = 1
Query:  100 GISCTFPGEKK---------------TGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G++ T+PG ++                 +VG +GSGK+T    L R     A                  R  ++++ QD V+F  T+ +N+      + T ++I  A       + +      L++ + ENG   S GQRQ + + R +LK   IL+LDEAT+++DT ++  +Q +L +     + + IAHR++++  +D ++ L+HG  +E  S
Sbjct:  345 GVTFTYPGSERPALDSVSLTVRPGECVALVGPSGSGKTTAANLLPRFYALDAGEIRVDGHALPNIRLNSLRDNIALVSQDVVLFNDTIGANIAYGGKRDATLDEIRAAAKAAHALEFIDALPEGLNTMIGENGVKLSGGQRQRLAIARAILKDAPILILDEATSALDTESERHVQAALDELMRGRSTLVIAHRLSTIERADRIIALAHGHKQEEGS 560          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_SHEDO (Lipid A export ATP-binding/permease protein msbA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=msbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 57/193 (29.53%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXX-RTRLSIIPQDPVMFEGTVRSNVDPLE--EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            PG K   +VGR+GSGKST+   + R                         R++++++ Q   +F  ++ +N+      E + EQI +A       + + +    LD++V ENG   S GQRQ + + R +L+   +L+LDEAT+++DT ++  IQ  L     + T I IAHR++++  +D +L++  G I E
Sbjct:  385 PG-KTVALVGRSGSGKSTMASLITRFYTGLEQGDIRLDDVSIYDYSLKSLRSQVALVSQQVTLFNDSIANNIAYAYPGEVSREQILKAATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQLGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIIE 576          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MDLA_BUCBP7.822e-1726.48Multidrug resistance-like ATP-binding protein mdlA... [more]
MCHF_ECOLX7.822e-1725.60Probable microcin-H47 secretion/processing ATP-bin... [more]
NDVA_RHOPS1.334e-1625.54Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_PSEU21.742e-1627.85Lipid A export ATP-binding/permease protein msbA O... [more]
SUNT_BPSPC2.276e-1626.34Sublancin-168-processing and transport ATP-binding... [more]
SUNT_BACSU2.276e-1626.34SPBc2 prophage-derived sublancin-168-processing an... [more]
MSBA_PSESM2.276e-1627.85Lipid A export ATP-binding/permease protein msbA O... [more]
MCJD_ECOLX2.276e-1627.91Microcin-J25 export ATP-binding/permease protein m... [more]
MSBA_DECAR5.070e-1626.39Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHEDO6.621e-1629.53Lipid A export ATP-binding/permease protein msbA O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
back to top