FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NDVA_BRAJA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bradyrhizobium japonicum GN=ndvA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 55/218 (25.23%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++  D+   Y    P V        PG+    +VG TG+GKST I  L R  +P +                  R  + ++ Q+ ++F  ++  N+   + + T+ ++ +A ++ Q  + + ++ G  ++   E G   S G+RQ + + R LLK   IL+LDEAT+++D  T+  +  +L +     T   IAHR+ ++ ++  +L+  +G + E
Sbjct:  338 GLVEFNDVTFSYDGKRPAVEDLSFTALPGQT-VALVGPTGAGKSTAIALLHRAFDPQSGFIRIDGMDVRGVTLTSLRRNIGVVFQEALLFNRSIAENLRVGKPDATEAEMRKAAERAQALEFI-ERSGGFETNAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEVKVNAALDEVMRGRTTFVIAHRLATIRNATRILVFENGRVTE 553          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y014_MYCGE (Putative ABC transporter ATP-binding protein MG014 OS=Mycoplasma genitalium GN=MG014 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 57/212 (26.89%), Postives = 100/212 (47.17%), Query Frame = 1
Query:   94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-------DPLEEYTDEQIWEALD---KCQLGDE-VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            L+ +S  F   K  GIVG TGSGKS +   +  + EP                       + I+ Q  ++F+GT+ SN+          +  +D Q  EA+    K    D  + K     D  V + G+N S GQ+Q V + R L+ + +IL+ D++ +++D  T+  +++++       T I I+  I S+  +D +L++ +G I  +DS
Sbjct:  383 LQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEMIGIVFQQNILFKGTISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKVRENIENDLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDS 594          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB17I_ARATH (ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 69/228 (30.26%), Postives = 111/228 (48.68%), Query Frame = 1
Query:   31 SHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-----PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVD-TATDNL--IQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEE 687
            S  KI + DL  R A     +L+G++   P     G++G +GSGKST +++L R+ EP                    R R+ ++ Q PV+F+GTV  NV        E+ +DE++++ L    L     KK           G   S+GQ Q V L R L    ++L+LDE T+++D  +T+N+  +   L++     TVI ++H I  +   +D+V L+  G I E
Sbjct:   25 SEPKIRVHDL-TRVADDGSRILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKK----------TGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVI-VSHSIKQIQKVADIVCLVVDGEIVE 240          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: YNT9_SCHPO (Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c OS=Schizosaccharomyces pombe GN=SPBC9B6.09c PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 51/189 (26.98%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  139 IVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLR--QHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            IV  +G GKST+ Q L R   P++                  R+   ++ Q+PV+F GT+  N+       + E+I +A  +      +   E K  ++V   G   S GQ+Q + + R LL+    L+LDEAT+++D   + ++ ++++   H    T ITIAH++ ++  +D ++++  G + E  S
Sbjct:  515 IVAPSGGGKSTISQLLLRFYAPSSGKILADGVDISTYNVHQWRSHFGLVGQEPVLFSGTIGENIAYGKSNASQEEIEDAAKRANCSFVLSFPE-KWSTQVGTRGLQLSGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHKLATIRRADQIIVVGDGKVLEQGS 702          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDL1_YEAST (ATP-dependent permease MDL1, mitochondrial OS=Saccharomyces cerevisiae GN=MDL1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 60/226 (26.55%), Postives = 103/226 (45.58%), Query Frame = 1
Query:   85 PFVLRGISCTFPGEKKTGI----------------VGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV----DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFS-DCTVITIAHRITSVIDSDMVLLL-SHGLIEEYDS 696
            P V + +S T+P   K  I                VG +GSGKST+   L R  +  +                  R  +  + Q+P++F GT+  N+     P     D++I  A+ K      +      L + V   G   S GQ+Q + L R  L    +L+LDEAT+++D+ ++ ++ ++L++      T I+IAHR++++  S  V++L  HG + E  S
Sbjct:  431 PIVFKNVSFTYPTRPKHQIFKDLNITIKPGEHVCAVGPSGSGKSTIASLLLRYYDVNSGSIEFGDEDIRNFNLRKYRRLIGYVQQEPLLFNGTILDNILYCIPPEIAEQDDRIRRAIGKANCTKFLANFPDGLQTMVGARGAQLSGGQKQRIALARAFLLDPAVLILDEATSALDSQSEEIVAKNLQRRVERGFTTISIAHRLSTIKHSTRVIVLGKHGSVVETGS 656          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDD_HAEIN (ATP-binding/permease protein cydD OS=Haemophilus influenzae GN=cydD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 52/189 (27.51%), Postives = 97/189 (51.32%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            P      +VG++G+GK++L+  +   + P                    R  ++ + Q+P++ +GT++ N+   + +  DE+I +AL + Q   E   K G L  ++ + G   S+GQ Q + + R LL++  +L+LDE TAS+D  ++NL+ Q+L +     T + I HRI  +   D + ++  G I
Sbjct:  374 PANHNVALVGQSGAGKTSLMNVILGFL-PYEGSLKINGQELRESNLADWRKHIAWVGQNPLLLQGTIKENLLLGDVQANDEEINQALMRSQ-AKEFTDKLG-LHHEIKDGGLGISVGQAQRLAIARALLRKGDLLLLDEPTASLDAQSENLVLQALNEASQHQTTLMITHRIEDLKQCDQIFVMQRGEI 559          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: NIST_LACLA (Nisin transport ATP-binding protein nisT OS=Lactococcus lactis subsp. lactis GN=nisT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 57/226 (25.22%), Postives = 105/226 (46.46%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV---DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKV---TENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            G + + +L   Y     F L+ I+ +F   + T IVG+ GSGKSTL++ +  + +P                    +  +S++ QD V +E T+R N+   D   ++ DE+I + LD   L       +  LD+++    + G   S GQ Q + L R   K+  I +LDE +A++D   +  I         +   I I+H + +   ++ ++++  G +E+  S
Sbjct:  350 GTVKVINLSYVYPNSNAFALKNINLSFEKGELTAIVGKNGSGKSTLVKIISGLYQPTMGIIQYDKMRSSLMPEEFYQKNISVLFQDFVKYELTIRENIGLSDLSSQWEDEKIIKVLDNLGLDFLKTNNQYVLDTQLGNWFQEGHQLSGGQWQKIALARTFFKKASIYILDEPSAALDPVAEKEIFDYFVALSENNISIFISHSLNAARKANKIVVMKDGQVEDVGS 575          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP1_GORGO (Antigen peptide transporter 1 OS=Gorilla gorilla gorilla GN=TAP1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 60/223 (26.91%), Postives = 107/223 (47.98%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G +  +D+   Y P+ P   VL+G++ T    + T +VG  GSGKST+   L  + +P                      +++ + Q+P +F  +++ N+     ++ T E+I  A  KC     +       D++V E G   S GQRQ V L R L+++  +L+LD+AT+++D  +   ++Q L +       +V+ I   ++ V  +D +L L  G I E
Sbjct:  501 GLVQFQDVSFAY-PNRPDVLVLQGLTFTLHPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKCGAHSFISGLPQGYDTEVGEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE 722          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: STE6_YEAST (Alpha-factor-transporting ATPase OS=Saccharomyces cerevisiae GN=STE6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 57/227 (25.11%), Postives = 110/227 (48.46%), Query Frame = 1
Query:   34 HGK-----IDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP--LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            HGK     + +++L   Y P  P  FV + ++      +  GI+G +G+GKSTL+  L ++                       R  +S++ Q P++F GT+R N+     +E  + ++++AL    + D V      LD+++       S GQ Q +C+ R LL++ KIL+LDE T+++D+ + ++I + +++       + I H    +   + + +L  G + E
Sbjct: 1044 HGKEKKPIVSIQNLTFAY-PSAPTAFVYKNMNFDMFCGQTLGIIGESGTGKSTLVLLLTKLYNCEVGKIKIDGTDVNDWNLTSLRKEISVVEQKPLLFNGTIRDNLTYGLQDEILEIEMYDALKYVGIHDFVISSPQGLDTRIDTT--LLSGGQAQRLCIARALLRKSKILILDECTSALDSVSSSIINEIVKKGPPALLTMVITHSEQMMRSCNSIAVLKDGKVVE 1267          

HSP 2 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 54/210 (25.71%), Postives = 91/210 (43.33%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV-----DPLEEY---TDEQIWEALDKCQ---LGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            VL+ +S  F   + T IVG++GSGKSTL   L R  +                        ++++ Q   +F  T+R N+     D +      T+E      D CQ   L   +      L++ +   G   S GQ+Q V + R  ++   IL LDEA +++D    NL+ +++R      T I + H ++ +   D + L+  G + E
Sbjct:  374 VLKNVSLNFSAGQFTFIVGKSGSGKSTLSNLLLRFYDGYNGSISINGHNIQTIDQKLLIENITVVEQRCTLFNDTLRKNILLGSTDSVRNADCSTNENRHLIKDACQMALLDRFILDLPDGLETLIGTGGVTLSGGQQQRVAIARAFIRDTPILFLDEAVSALDIVHRNLLMKAIRHWRKGKTTIILTHELSQIESDDYLYLMKEGEVVE 583          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP1_RAT (Antigen peptide transporter 1 OS=Rattus norvegicus GN=Tap1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 58/222 (26.13%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPF-VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G +  +D+   Y  H    VL+G++ T    K T +VG  GSGKST+   L  + +P                     T+++ + Q+P++F  + R N+        T E+I     +    D +       D++V E G   S GQRQ V L R L+++ ++L+LD+AT+++D      +Q+ L +   ++  TV+ I  +++    +  +L L  G + E
Sbjct:  478 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDDATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCE 699          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
NDVA_BRAJA8.648e-1625.23Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
Y014_MYCGE1.129e-1526.89Putative ABC transporter ATP-binding protein MG014... [more]
AB17I_ARATH2.516e-1530.26ABC transporter I family member 17 OS=Arabidopsis ... [more]
YNT9_SCHPO3.286e-1526.98Uncharacterized ABC transporter ATP-binding protei... [more]
MDL1_YEAST5.605e-1526.55ATP-dependent permease MDL1, mitochondrial OS=Sacc... [more]
CYDD_HAEIN5.605e-1527.51ATP-binding/permease protein cydD OS=Haemophilus i... [more]
NIST_LACLA7.321e-1525.22Nisin transport ATP-binding protein nisT OS=Lactoc... [more]
TAP1_GORGO9.561e-1526.91Antigen peptide transporter 1 OS=Gorilla gorilla g... [more]
STE6_YEAST1.249e-1425.11Alpha-factor-transporting ATPase OS=Saccharomyces ... [more]
TAP1_RAT2.130e-1426.13Antigen peptide transporter 1 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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