FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDR_PLAFF (Multidrug resistance protein OS=Plasmodium falciparum (isolate FC27 / Papua New Guinea) GN=MDR1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 45/139 (32.37%), Postives = 83/139 (59.71%), Query Frame = 1
Query:  265 RTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSL--RQHFSDCTVITIAHRITSVIDSDMVLLLSH 672
            R   SI+ Q+P++F  ++  N+    E+ T E +        + + +     K D+ V   G++ S GQ+Q + + R LL+  KIL+LDEAT+S+D+ ++ LI++++   +  +D T+ITIAHRI S+  SD +++ ++
Sbjct: 1248 RNLFSIVSQEPMLFNMSIYENIKFGREDATLEDVKRVSKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1386          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLA_BUCAI (Multidrug resistance-like ATP-binding protein mdlA OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mdlA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 55/221 (24.89%), Postives = 105/221 (47.51%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ-HFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            +P++ K  L+D+++   P                   GI G TGSGKSTL+  + R                        R R++++ Q   +F  T+ +N+       + ++I E      +  ++     + +++V E G   S GQ+Q VC+ R LL   +IL+LD+A ++VD  T+N I +++ +      ++I   HR++++I+SD ++++  G I
Sbjct:  344 YPNNQKPSLKDIRILIKPG---------------NTLGICGPTGSGKSTLLMLIQRQFNFKKEEIHYHSLSLLEIKIDDWRRRIAVVNQTSFLFSDTISNNISLGKPNASQKEIEEVAKLADVHKDIIDLPERYETQVGERGVMLSGGQKQRVCIARALLLNAEILILDDALSAVDAQTENNILKNINEWKKKKHSLIITTHRLSALINSDEIIVIKSGSI 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AB26B_ARATH (ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 55/199 (27.64%), Postives = 99/199 (49.75%), Query Frame = 1
Query:  118 PGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPL--EEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDC----TVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            PGE    IVG +GSGKSTL+  L ++ EP +                  R R+  + Q+P +F   + SN+        + E I  A  +    D +       ++ V +  +  S GQ+Q + + R +L+  +IL+LDEAT+++D  +++ ++  LR   +D     +VI IAHR++++  +D ++ +  G + E  S
Sbjct:  482 PGEV-VAIVGLSGSGKSTLVNLLLQLYEPTSGQILLDGVPLKELDVKWLRQRIGYVGQEPKLFRTDISSNIKYGCDRNISQEDIISAAKQAYAHDFITALPNGYNTIVDD--DLLSGGQKQRIAIARAILRDPRILILDEATSALDAESEHNVKGVLRSIGNDSATKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGS 677          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP1_HUMAN (Antigen peptide transporter 1 OS=Homo sapiens GN=TAP1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 59/223 (26.46%), Postives = 106/223 (47.53%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMP--FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G +  +D+   Y P+ P   VL+G++ T    + T +VG  GSGKST+   L  + +P                      +++ + Q+P +F  +++ N+     ++ T E+I  A  K      +       D++V E G   S GQRQ V L R L+++  +L+LD+AT+++D  +   ++Q L +       +V+ I   ++ V  +D +L L  G I E
Sbjct:  561 GLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE 782          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CVAB_ECOLX (Colicin V secretion/processing ATP-binding protein cvaB OS=Escherichia coli GN=cvaB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 50/208 (24.04%), Postives = 98/208 (47.12%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIW--EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVL 660
            ++   L  RY      +   +S +    +   I G +G+GK+TL++ L  + EP +                     ++ + QD  +F G++R N+    E  DE+ W  E      + D +       ++ + E GE  S GQ+Q + + R L ++  IL +DEAT+++D+ +++ +  +++    + T + IAHR T++   D V+
Sbjct:  492 LETNGLSYRYDSQSAPIFSALSLSVAPGESVAITGASGAGKTTLMKVLCGLFEPDSGRVLINGIDIRQIGINNYHRMIACVMQDDRLFSGSIRENICGFAEEMDEE-WMVECARASHIHDVIMNMPMGYETLIGELGEGLSGGQKQRIFIARALYRKPGILFMDEATSALDSESEHFVNVAIKN--MNITRVIIAHRETTLRTVDRVI 696          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDD_BACSU (ATP-binding/permease protein cydD OS=Bacillus subtilis GN=cydD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 50/199 (25.13%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   91 VLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIE 684
            VL   S T    +K  ++GR+GSGKST +  +   ++P +                     ++++ Q P +F+ ++ +N+     E +DE +  A  + +L D +        + V E G  +S G+RQ + L R+LL+   I++LDE T  +D  T+  + +++ +     T++ I H +  V  +D ++ L +G  E
Sbjct:  352 VLHNFSFTLRQGEKMALLGRSGSGKSTSLALIEGALKPDSGSVTLNGVETALLKDQIADA-VAVLNQKPHLFDTSILNNIRLGNGEASDEDVRRAAKQVKLHDYIESLPDGYHTSVQETGIRFSGGERQRIALARILLQDTPIIILDEPTVGLDPITERELMETVFEVLKGKTILWITHHLAGVEAADKIVFLENGKTE 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y018_MYCPN (Putative ABC transporter ATP-binding protein MG014 homolog OS=Mycoplasma pneumoniae GN=MPN_018 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 51/212 (24.06%), Postives = 97/212 (45.75%), Query Frame = 1
Query:   94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDE-----------VRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            L+ ++  F   K  GIVG TGSGKS +   +  + EP                       + I+ Q  ++F+GT+ SN+    E  ++   E   K     +           + K     D  V + G+N S GQ+Q V + R ++ + +IL+LD++ +++D  T+  +++++       T I I+  I S+  +  ++++ +G I  +DS
Sbjct:  383 LQDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPNQGEIFVGGQSIKTIDSDYLAKMIGIVFQQNILFKGTIASNIKIGLETREDWKHEPDSKKDAAMKRAAAIACADTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDSMSALDALTEKKVRENIANELPGTTKIIISQNINSIKYAHKIMVIDNGRIAGFDS 594          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MDLA_BUCAP (Multidrug resistance-like ATP-binding protein mdlA OS=Buchnera aphidicola subsp. Schizaphis graminum GN=mdlA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 52/218 (23.85%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   34 HGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ-HFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            +GK+++      Y  +    L+ I  +    K  GI G TG+GKSTL++ + R  +                     R+++ ++ Q   +F  ++ +N+     + + ++I +A     +  ++       +++V E G   S GQ+Q + + R LL   +IL+LD+A ++VD  T+N I ++L++      ++I +AHR++++I +D ++++  G I
Sbjct:  332 NGKLNINIDMFFYPKNKKPSLKNIYLSLNPGKTLGICGPTGAGKSTLLKLIQRQFKIHKGEILYNSSSLLELKIDYWRSKIGVVNQTSFLFSDSISNNISLGKPKASQKEIEKAAKLADIHKDIVCLPQGYNTQVGERGVMLSGGQKQRIAIARALLLNTEILILDDALSAVDGKTENNILKNLKKWKDKGYSLIIVAHRLSALIHADEIIVIKEGTI 549          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: TAP1_MOUSE (Antigen peptide transporter 1 OS=Mus musculus GN=Tap1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 58/223 (26.01%), Postives = 104/223 (46.64%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFV--LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNV--DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ--HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G ++ +D+   Y P+ P V  L+G++ T      T +VG  GSGKST+   L  + +P                     T+++ + Q+P++F  + R N+        T E+I     +    D +       D++V E G   S GQRQ V L R L+++  +L+LD+AT+++D      +Q+ L +    +  TV+ I  +++    +  +L L  G + E
Sbjct:  477 GLVEFQDVSFAY-PNQPKVQVLQGLTFTLHPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGQRLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLNRTPTMEEITAVAVESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPLLLILDDATSALDAGNQLRVQRLLYESPKRASRTVLLITQQLSLAEQAHHILFLREGSVGE 698          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: APRD_PSEAE (Alkaline protease secretion ATP-binding protein aprD OS=Pseudomonas aeruginosa GN=aprD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 51/200 (25.50%), Postives = 90/200 (45.00%), Query Frame = 1
Query:   94 LRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQ-HFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            LRG++   P     G++G +GSGKS+L + +  I                         R+  +PQD  +F GTV  N+    E   +++ EA     + + V +     D+ +   G   S GQRQ + L R L     +++LDE  +++D + +  +  +++      CTV+ I HR   +  +D +L L+ G +  Y
Sbjct:  349 LRGLTLAIPAGSVVGVIGPSGSGKSSLARVVLGIWPTLHGSVRLDGAEIRQYERETLGPRIGYLPQDIELFAGTVAENIARFGEVQADKVVEAARLAGVHELVLRLPQGYDTVLGVGGAGLSGGQRQRIALARALYGAPTLVVLDEPNSNLDDSGEQALLAAIQALKARGCTVLLITHRAGVLGCADRLLALNAGQLHLY 548          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MDR_PLAFF2.130e-1432.37Multidrug resistance protein OS=Plasmodium falcipa... [more]
MDLA_BUCAI3.633e-1424.89Multidrug resistance-like ATP-binding protein mdlA... [more]
AB26B_ARATH6.197e-1427.64ABC transporter B family member 26, chloroplastic ... [more]
TAP1_HUMAN1.057e-1326.46Antigen peptide transporter 1 OS=Homo sapiens GN=T... [more]
CVAB_ECOLX1.057e-1324.04Colicin V secretion/processing ATP-binding protein... [more]
CYDD_BACSU1.381e-1325.13ATP-binding/permease protein cydD OS=Bacillus subt... [more]
Y018_MYCPN3.076e-1324.06Putative ABC transporter ATP-binding protein MG014... [more]
MDLA_BUCAP3.076e-1323.85Multidrug resistance-like ATP-binding protein mdlA... [more]
TAP1_MOUSE4.017e-1326.01Antigen peptide transporter 1 OS=Mus musculus GN=T... [more]
APRD_PSEAE1.169e-1225.50Alkaline protease secretion ATP-binding protein ap... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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