FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: PSTB2_RHIL3 (Phosphate import ATP-binding protein pstB 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=pstB2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 58/243 (23.87%), Postives = 109/243 (44.86%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIV-------EPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDP--------LEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEY 690
            RP HS P+  K+ L  +   Y       +R ++ +FP  + + ++G +G GKSTL++ L RI           +                  R R+ ++ Q PV F  ++  N+           +   D ++ +AL    L DEV+        K+  +G   S GQ+Q +C+ R +  R ++L+LDE T+++D  +   +++ + +  +D T++ + H +      SD    +  G + EY
Sbjct:   11 RPAHSAPTVDKMALTGVNFYYGD--AHAIRDVTLSFPERQVSALIGPSGCGKSTLLRILNRIYMLYPKMRATGSVTLDGQNILDPGYSMNELRARVGMVFQKPVPFPMSIYDNIAYGIRHHERISKAEMDVRVEQALRSAALWDEVK-------DKLKGSGLGLSGGQQQRLCIARAVALRPEVLLLDEPTSALDPISTAKVEELVARLKTDFTIVIVTHNMQQASRISDNTAFMYLGELVEY 244          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CYDD_ECOLI (ATP-binding/permease protein cydD OS=Escherichia coli (strain K12) GN=cydD PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 49/196 (25.00%), Postives = 93/196 (47.45%), Query Frame = 1
Query:  103 ISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLE-EYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            ++ T P  ++  +VGR+GSGKS+L+  L   +                      R  LS + Q+P +   T+R NV     + +++++  ALD   + + +      +D+ V +     S+GQ Q V + R LL    +L+LDE  AS+D  ++  + ++L       T + + H++  + D D++ ++  G I E
Sbjct:  369 LNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESW-RKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIE 563          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: PSTB_CHRVO (Phosphate import ATP-binding protein pstB OS=Chromobacterium violaceum GN=pstB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 53/213 (24.88%), Postives = 93/213 (43.66%), Query Frame = 1
Query:   40 KIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVE-------PAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD---------PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRI 630
            K+++RDL   Y       L+GI       K T  +G +G GKSTL++T  R+ E                            R ++ ++ Q P  F  ++  N+             E  D   W AL K  L DEV+        K+ ++G + S GQ+Q +C+ R +  + ++L+LDE T+++D  +   I++ + +   D T+  + H +
Sbjct:   10 KLEVRDLNFFYGNF--HALKGIQLEIAPRKVTAFIGPSGCGKSTLLRTFNRMYELYPGLRAEGEIMLDGQNILGRDIDVNLLRAKVGMVFQKPTPFPMSIYDNITFGVKLYEKLSKGEMEDRVEW-ALRKAALWDEVK-------DKLKQSGNSLSGGQQQRLCIARAVASKPEVLLLDEPTSALDPISTAHIEELIHELKEDYTIAIVTHNM 212          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: PSTB1_LACJO (Phosphate import ATP-binding protein pstB 1 OS=Lactobacillus johnsonii GN=pstB1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 59/232 (25.43%), Postives = 106/232 (45.69%), Query Frame = 1
Query:   43 IDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXX-----RTRLSIIPQDPVMFEGTVRSNV--------DPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVID-SDMVLLLSHGLIEEYDS 696
            I  +DL V Y   +  +    S  F  +  T ++G +GSGKST ++ L R+ +  A                       R  + ++ Q P  F  ++R N+        +  ++  D+ + E+L    L DEV+ K  K  S +  +G     GQ+Q +C+ R L  + +IL+LDE  +++D  + + ++ +L+Q  +D T+I + H +      SD       G + EYD+
Sbjct:   21 ISTQDLSVFYGGSVQKLFNA-SLQFKKKTITALIGGSGSGKSTFLRCLNRMNDKVARVDGEIWYHGLDINKNNINVYQLRKNIGMVFQKPNPFPKSIRENITYALKANGENDKQKLDQIVEESLRAAALWDEVKDKLDK--SALAMSG-----GQQQRLCIARALALKPEILLLDEPASALDPVSTSKLEDTLKQLRTDYTMIMVTHNMQQASRISDYTAFFHLGHVLEYDT 244          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: AARD_PROST (Transport ATP-binding protein aarD OS=Providencia stuartii GN=aarD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 45/191 (23.56%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  112 TFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDE-QIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLI 681
            T   +++  + G++G+GKS+L+  L   + P                    R  +  + Q+P + E T+  N+   +    E +I +A+D   + + +      L++++ +     S+GQ Q V + R LLK  +IL+LDE  AS+D  ++  +  +L Q     T I + H +   ++ D + ++++G I
Sbjct:  372 TIEPQQRIAVFGQSGAGKSSLLNLLLGFL-PYKGSIKINGDELKELCPDKWRALIGWVGQNPHLPEQTLIENICLGKPTASEAEIQQAIDDAYVSEFLPMLPDGLNTRLGDYAARLSVGQAQRVAVARTLLKPSRILLLDEPAASLDAHSEKRVMHTLNQLAQQQTTIMVTHLLEETVNYDQIWVMANGQI 561          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
PSTB2_RHIL35.801e-1223.87Phosphate import ATP-binding protein pstB 2 OS=Rhi... [more]
CYDD_ECOLI9.894e-1225.00ATP-binding/permease protein cydD OS=Escherichia c... [more]
PSTB_CHRVO4.910e-1124.88Phosphate import ATP-binding protein pstB OS=Chrom... [more]
PSTB1_LACJO6.413e-1125.43Phosphate import ATP-binding protein pstB 1 OS=Lac... [more]
AARD_PROST8.376e-1123.56Transport ATP-binding protein aarD OS=Providencia ... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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