FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC9_HUMAN (ATP-binding cassette transporter sub-family C member 9 OS=Homo sapiens GN=ABCC9 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 100/228 (43.86%), Postives = 149/228 (65.35%), Query Frame = 1
Query:   13 PNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            P H WP  G+I + DL VRY  ++  VL+ +       +K GI GRTGSGKS+L    FR+V+                     R+RLSII QDP++F G++R N+DP  + TD+++WEAL+  QL + V+   G LD+ VTE GEN+S+GQRQL CL R  +++  IL++DEATAS+D AT+N++Q+ +   F+D TV+TIAHR++S++D+ +VL+ S G++ E D+
Sbjct: 1303 PEH-WPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSSIMDAGLVLVFSEGILVECDT 1529          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP7_MOUSE (Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.543e-49
Identity = 99/225 (44.00%), Postives = 145/225 (64.44%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            SW + G ++ +D+ + Y P +P  L G++      +K GIVGRTGSGKS+L   LFR++EP A                  R++L++IPQ+P +F GT+R N+DP   + D  +W+AL++C L  EV    G LD ++ E G+N S+GQRQL+CL R LL   KIL +DEATASVD  TD L+QQ++ + F++ TV+TIAHR+ ++++SD VL+L  G + E DS
Sbjct: 1248 SWLTQGSVEFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAGRVLLDNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLS-EVAVAMGGLDGELGERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDS 1471          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP7_HUMAN (Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 102/225 (45.33%), Postives = 147/225 (65.33%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGIS-CTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            W + G ++ +D+ + Y P +P  L G++ C  PGEK  GIVGRTGSGKS+L+  LFR++EP++                  R++L+IIPQ+P +F GTVR N+DP   + D  +W+AL +C L  EV    G LD ++ E G + S+GQRQL+CL R LL   KIL +DEATASVD  TD L+QQ++ + F++ TV+TIAHR+ ++++SD VL+L  G + E DS
Sbjct: 1240 WLTQGGVEFQDVVLAYRPGLPNALDGVTFCVQPGEK-LGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLHKDRALWQALKQCHLS-EVITSMGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDS 1462          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC2_DICDI (ABC transporter C family member 2 OS=Dictyostelium discoideum GN=abcC2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.749e-49
Identity = 89/224 (39.73%), Postives = 145/224 (64.73%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G+++ ++++++Y P     L+ IS     +   G+VGRTG+GKST+  +LFR+VE +                   R  L I+PQDP +F G++R N+DP  +YTD++IW AL+K +L D +     KL+S V ENG+  S GQ+QL+CL R +LK  K++++DEAT+ +D  T  L++Q++ ++F+DCT++TIAHR+ ++IDS  + ++  G + EYD+
Sbjct: 1131 WPSRGEVEFKNVEIKYRPTADPSLKNISFKINAKDHIGVVGRTGAGKSTVGISLFRMVECSKGSIFIDGVDISKVGLHELRDALGIVPQDPFIFSGSIRMNIDPFNKYTDDEIWTALEKVKLKDAISSMPLKLESGVQENGDGLSFGQKQLLCLSRTILKNSKVVLMDEATSGIDYVTAALLKQTIDENFNDCTMLTIAHRLDTIIDSTKIAVIDKGELVEYDT 1354          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCCE_DICDI (ABC transporter C family member 14 OS=Dictyostelium discoideum GN=abcC14 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.322e-48
Identity = 89/226 (39.38%), Postives = 151/226 (66.81%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN-WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +WP+ G I+ ++++++Y P+    L+ +S      +K GIVGRTG+GK+T+  +LFR+VE +                   R+ + I+PQDP +F GT+RSN+DP  E+TD +IWE+++K +L D +     KL++ + ENG+N +S GQ+QL+CL R +LK  KI+++DEAT+S+D  T  LI+Q+++++F DCT +TIAHR+ ++ID + + ++  G + E+D+
Sbjct: 1064 NWPNKGIIEFKNVEIKYRPNSEPNLKDLSFKVQSSEKIGIVGRTGAGKTTIASSLFRMVECSKGLILIDGIDISKVQLQKLRSSIGIVPQDPFIFTGTIRSNIDPFNEFTDFEIWESIEKVKLKDAINSMPLKLETALQENGDNGFSYGQKQLLCLCRTILKNFKIILMDEATSSIDYHTAQLIKQTIQENFKDCTTLTIAHRLETIIDCNKIAVIDSGQLIEFDT 1289          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC6_DICDI (ABC transporter C family member 6 OS=Dictyostelium discoideum GN=abcC6 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.726e-48
Identity = 89/226 (39.38%), Postives = 151/226 (66.81%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGEN-WSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +WP+ G I+ ++++++Y P+    L+ +S      +K GIVGRTG+GK+T+  +LFR+VE +                   R+ + I+PQDP +F GT+RSN+DP  E+TD +IWE+++K +L D +     KL++ + ENG+N +S GQ+QL+CL R +LK  KI+++DEAT+S+D  T  LI+Q+++++F DCT +TIAHR+ ++ID + + ++  G + E+D+
Sbjct: 1094 NWPNKGIIEFKNVEIKYRPNSEPNLKDLSFKVQSSEKIGIVGRTGAGKTTIASSLFRMVECSKGLILIDGIDISKVQLQKLRSSIGIVPQDPFIFTGTIRSNIDPFNEFTDFEIWESVEKVKLKDAINSMPLKLETALQENGDNGFSYGQKQLLCLCRTILKNFKIILMDEATSSIDYHTAQLIKQTIQENFKDCTTLTIAHRLETIIDCNKIAVIDSGQLIEFDT 1319          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: VMR1_YEAST (ABC transporter ATP-binding protein/permease VMR1 OS=Saccharomyces cerevisiae GN=VMR1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 98/239 (41.00%), Postives = 151/239 (63.18%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQL-----GDEVRKKEGKLDS----------KVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            SWP  G+I++ +L +RYAP++P V+R +S     + K GIVGRTG+GKST+I  LFR++EP                    R  ++IIPQDP++F GT++SNVDP +EY +++I++AL +  L      +EV   E + +S          ++ E G N S G+RQL+ + R LL+  KI++LDEAT+S+D  +D+LIQ  +R  F+  T++TIAHR+ SVID D ++++  G ++EYD
Sbjct: 1316 SWPKDGEIEIENLSLRYAPNLPPVIRNVSFKVDPQSKIGIVGRTGAGKSTIITALFRLLEPITGCIKIDGQDISKIDLVTLRRSITIIPQDPILFAGTIKSNVDPYDEYDEKKIFKALSQVNLISSHEFEEVLNSEERFNSTHNKFLNLHTEIAEGGLNLSQGERQLLFIARSLLREPKIILLDEATSSIDYDSDHLIQGIIRSEFNKSTILTIAHRLRSVIDYDRIIVMDAGEVKEYD 1554          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MRP6_HUMAN (Multidrug resistance-associated protein 6 OS=Homo sapiens GN=ABCC6 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 97/224 (43.30%), Postives = 139/224 (62.05%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WP  G+I+ RD  +RY P +P  ++G+S      +K GIVGRTG+GKS+L   L R+ E A                   R+R+SIIPQDP++F G++R N+D L+E++DE IW AL+  QL   V    G+L  K  + GE+ S+GQ+QL+CL R LL++ +IL+LDEATA+VD  T+  +Q  L   F+ CTV+ IAHR+ SV+D   VL++  G + E  S
Sbjct: 1259 WPQGGQIEFRDFGLRYRPELPLAVQGVSFKIHAGEKVGIVGRTGAGKSSLASGLLRLQEAAEGGIWIDGVPIAHVGLHTLRSRISIIPQDPILFPGSLRMNLDLLQEHSDEAIWAALETVQLKALVASLPGQLQYKCADRGEDLSVGQKQLLCLARALLRKTQILILDEATAAVDPGTELQMQAMLGSWFAQCTVLLIAHRLRSVMDCARVLVMDKGQVAESGS 1482          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC8_RAT (ATP-binding cassette transporter sub-family C member 8 OS=Rattus norvegicus GN=Abcc8 PE=1 SV=4)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 95/224 (42.41%), Postives = 142/224 (63.39%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            +WP  GKI +++L VRY   +  VL+ ++      +K GI GRTGSGKS+     FR+V+                     R+RLSII QDPV+F GT+R N+DP ++ +D  +WEAL+  QL   V+   G LD+ +TE GEN+S GQRQL CL R  +++  I ++DEATAS+D AT+N++Q+ +   F+D TV+TIAHR+ +++ +D+V++L  G I E+D
Sbjct: 1338 NWPDQGKIQIQNLSVRYDSSLKPVLKHVNALISPGQKIGICGRTGSGKSSFSLAFFRMVDMFEGRIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVHTILSADLVMVLKRGAILEFD 1561          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC8_HUMAN (ATP-binding cassette transporter sub-family C member 8 OS=Homo sapiens GN=ABCC8 PE=1 SV=5)

HSP 1 Score: 189.119 bits (479), Expect = 1.909e-47
Identity = 95/224 (42.41%), Postives = 141/224 (62.95%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYD 693
            +WP  GKI +++L VRY   +  VL+ ++      +K GI GRTGSGKS+     FR+V+                     R+RLSII QDPV+F GT+R N+DP  + +D  +WEAL+  QL   V+   G LD+ +TE GEN+S GQRQL CL R  +++  I ++DEATAS+D AT+N++Q+ +   F+D TV+TIAHR+ +++ +D+V++L  G I E+D
Sbjct: 1337 NWPDQGKIQIQNLSVRYDSSLKPVLKHVNALISPGQKIGICGRTGSGKSSFSLAFFRMVDTFEGHIIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPERKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVHTILSADLVIVLKRGAILEFD 1560          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ABCC9_HUMAN2.663e-4943.86ATP-binding cassette transporter sub-family C memb... [more]
MRP7_MOUSE4.543e-4944.00Multidrug resistance-associated protein 7 OS=Mus m... [more]
MRP7_HUMAN7.749e-4945.33Multidrug resistance-associated protein 7 OS=Homo ... [more]
ABCC2_DICDI7.749e-4939.73ABC transporter C family member 2 OS=Dictyostelium... [more]
ABCCE_DICDI1.322e-4839.38ABC transporter C family member 14 OS=Dictyosteliu... [more]
ABCC6_DICDI1.726e-4839.38ABC transporter C family member 6 OS=Dictyostelium... [more]
VMR1_YEAST3.846e-4841.00ABC transporter ATP-binding protein/permease VMR1 ... [more]
MRP6_HUMAN1.909e-4743.30Multidrug resistance-associated protein 6 OS=Homo ... [more]
ABCC8_RAT1.909e-4742.41ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_HUMAN1.909e-4742.41ATP-binding cassette transporter sub-family C memb... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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