FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC9_DICDI (ABC transporter C family member 9 OS=Dictyostelium discoideum GN=abcC9 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.325e-40
Identity = 86/226 (38.05%), Postives = 135/226 (59.73%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENW-SMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            +WP  G I   ++QV Y  +    L+ I+ +    +K GIVGRTG+GKST+   LFR+VE +                   R  L I+PQ+P +F GT+RSN+DPL +Y DE IW  L+  +L   + +   KL+SK+ ENG    S GQ+QL+CL R L+K  K++++DEAT+SVD  T   I+  + ++  + T++TIAHR+  +IDSD + ++ +  + E+++
Sbjct: 1096 NWPEKGNIQFNNVQVNYNSNSVPSLKDITFSVESNEKIGIVGRTGAGKSTIANCLFRLVECSKGSILIDGIDIKTIDLNKLRGSLGIVPQEPWLFSGTIRSNIDPLNQYDDEMIWNYLEMVKLKKLIIEMPLKLNSKIHENGNTTLSYGQKQLLCLCRCLIKNPKLIIMDEATSSVDFQTAETIKSVINENLVNNTILTIAHRLDIIIDSDKIAVIDNSKLIEFEN 1321          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABCC7_DICDI (ABC transporter C family member 7 OS=Dictyostelium discoideum GN=abcC7 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 84/225 (37.33%), Postives = 138/225 (61.33%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHG-LIEEYD 693
            +WP  G+I  ++++++Y P++   L+ IS      +K GIVG++GSGKST +  LFR++E +                   R  + I PQ+P +F GT+R N+DP   Y+D +IW AL+K +L + +     K+D+ + E   N S GQ+QL+CL RVLLK  K++  DE ++S+D  T + +  S++++ ++ T +TIAHRI ++IDSD +L++  G LIE +D
Sbjct: 1076 NWPQKGEIQFKNVEIKYRPNLKPSLKNISFDIKSNEKIGIVGKSGSGKSTTMLALFRMIECSKGSIHIDGIDISKISLSKLRNSIGICPQEPFIFSGTIRKNIDPFGIYSDSEIWLALEKVKLKETISLLPMKIDTIIHEQA-NLSFGQKQLLCLTRVLLKSPKLVFFDEHSSSIDYFTAHQLNISVKENITNSTTLTIAHRIDTIIDSDRILVIDSGELIEIFD 1299          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABC4_SCHPO (ATP-binding cassette transporter abc4 OS=Schizosaccharomyces pombe GN=abc4 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 88/230 (38.26%), Postives = 129/230 (56.09%), Query Frame = 1
Query:   22 SWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLG-------DEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            +WP  G I    + V Y+   P +L+ ++      +K  +VGRTGSGKSTL  TL R     +                  R R+S IPQDP++F GTVRSN+DP +E  D  + EAL             D+ +     LD+ V   G N+S GQ+Q++ L R +++R KI++LDE TASVD A D  IQ++LR+ F D T++ IAHR+ +++D D V++L  G++ EY
Sbjct: 1205 TWPKEGDIVFNHVSVSYSAAGPTILKDVNLHINPSEKVAVVGRTGSGKSTLGLTLLRFTHRISGEIYINGRETQSVNLNALRQRISFIPQDPILFSGTVRSNLDPFDELEDNFLNEALKTSGASSMIMAHTDDQKPIHITLDTHVASEGSNFSQGQKQVLALARAIVRRSKIIILDECTASVDDAMDQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEY 1434          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 95/235 (40.43%), Postives = 131/235 (55.74%), Query Frame = 1
Query:   16 NHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALD--KCQLGDEVRKKEG------KLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            N  WP+ G + +++L V Y+     VL  I+     ++K  IVGRTGSGKST+  TL R     +                  R R+S+IPQDPV+  GTVRSN+DP EEY D ++ E L    C+   +   K         LD+ V   G N+S GQRQ++ L R L+++ +I++LDE+TASVD  TD  IQQ LR  F   TV+ IAHRI +++D D VL+L  G   E+ S
Sbjct: 1171 NKEWPTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGS 1405          

HSP 2 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 48/184 (26.09%), Postives = 84/184 (45.65%), Query Frame = 1
Query:   88 FVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQS--LRQHFSDCTVITIAHRIT 633
            F L+ ++ T P  + T +VG TGSGKSTL   L   +   +                    R++ +PQ   +  GT+RSN+   E Y +E+ ++ +  C L  ++        + +  NG + S GQ+Q V L R L    ++ + D+  +++D +T   I +S  L       T+I   H ++
Sbjct:  595 FQLKNLNFTIPRNQFTLVVGSTGSGKSTLAMALLGELHVISGKMTTPSISQ----------RIAYVPQAAWLRNGTIRSNILFGEPYDEERYFQIIKACCLDSDLNSMNDGDLTYIHSNGSSLSGGQKQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCFLSTLLQHKTIILFTHNVS 768          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_HYLLE (Cystic fibrosis transmembrane conductance regulator OS=Hylobates leucogenys GN=CFTR PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 78/224 (34.82%), Postives = 127/224 (56.70%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+  L R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1204 WPSGGQMTVKDLSAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_ATEGE (Cystic fibrosis transmembrane conductance regulator OS=Ateles geoffroyi GN=CFTR PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 78/229 (34.06%), Postives = 128/229 (55.90%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            + N  WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1199 KKNDIWPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CERAE (Cystic fibrosis transmembrane conductance regulator OS=Cercopithecus aethiops GN=CFTR PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 78/224 (34.82%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IWE  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWEVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MICMU (Cystic fibrosis transmembrane conductance regulator OS=Microcebus murinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 78/224 (34.82%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  RY      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTARYLDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENNVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_SAIBB (Cystic fibrosis transmembrane conductance regulator OS=Saimiri boliviensis boliviensis GN=CFTR PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTIKDLTAKYVEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_PONAB (Cystic fibrosis transmembrane conductance regulator OS=Pongo abelii GN=CFTR PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
ABCC9_DICDI1.325e-4038.05ABC transporter C family member 9 OS=Dictyostelium... [more]
ABCC7_DICDI2.952e-4037.33ABC transporter C family member 7 OS=Dictyostelium... [more]
ABC4_SCHPO5.035e-4038.26ATP-binding cassette transporter abc4 OS=Schizosac... [more]
ABC1_SCHPO1.122e-3940.43ATP-binding cassette transporter abc1 OS=Schizosac... [more]
CFTR_HYLLE6.804e-3734.82Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ATEGE1.161e-3634.06Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CERAE1.516e-3634.82Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MICMU1.980e-3634.82Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_SAIBB2.586e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PONAB2.586e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
back to top