FC931255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MACFA (Cystic fibrosis transmembrane conductance regulator OS=Macaca fascicularis GN=CFTR PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36 Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP E+++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CALMO (Cystic fibrosis transmembrane conductance regulator OS=Callicebus moloch GN=CFTR PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36 Identity = 76/224 (33.93%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP E+++D+++W+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1204 WPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSVTLQQW-RKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEVWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CALJA (Cystic fibrosis transmembrane conductance regulator OS=Callithrix jacchus GN=CFTR PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36 Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP E+++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1205 WPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRTVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_PANTR (Cystic fibrosis transmembrane conductance regulator OS=Pan troglodytes GN=CFTR PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.760e-36 Identity = 76/229 (33.19%), Postives = 128/229 (55.90%), Query Frame = 1 Query: 10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 + ++ WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP E+++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1199 KKDYIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVAYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_ATEAB (Cystic fibrosis transmembrane conductance regulator OS=Atelerix albiventris GN=CFTR PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.760e-36 Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP E++ D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++++Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1207 WPSGGQMTVKDLTAKYIESGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTIKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1429
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_HORSE (Cystic fibrosis transmembrane conductance regulator OS=Equus caballus GN=CFTR PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36 Identity = 76/224 (33.93%), Postives = 124/224 (55.36%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP ++ D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGNVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CARPS (Cystic fibrosis transmembrane conductance regulator OS=Carollia perspicillata GN=CFTR PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36 Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WP G++ +++L +Y + +L IS + ++ G++GRTGSGKSTL+ L R++ R +IPQ +F GT R N+DP E++ DE+IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1206 WPLGGQMTIKNLIAKYTDNGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTEGEIQIDGVSWDSVTLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWNDEEIWKVADEVGLRSVIEQFPGKLDFVLLDGGFVLSHGHKQLLCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQQFLVIEENKVRQYDS 1428
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_SHEEP (Cystic fibrosis transmembrane conductance regulator OS=Ovis aries GN=CFTR PE=1 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 1.283e-35 Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ R++ R +IPQ +F GT R N+DP E+++D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1205 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 1.283e-35 Identity = 78/232 (33.62%), Postives = 129/232 (55.60%), Query Frame = 1 Query: 1 RKSRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 R R + WPS G++ ++DL +Y +L IS + ++ G++GRTGSGKSTL+ L R+V R +IPQ +F GT R N+DP ++ D++IW+ D+ L + + GKLD + + G S G +QL+CL R +L++ KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +++S Sbjct: 1199 RHVREDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLVNTEGEIQIDGVSWDSIPLQEWRRA-FGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLRKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEDSRLRQFES 1429
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_RHIFE (Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum GN=CFTR PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35 Identity = 77/224 (34.38%), Postives = 124/224 (55.36%), Query Frame = 1 Query: 25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696 WPS G+I ++DL +Y +L IS + ++ G++GRTGSGKSTL+ L R++ R +IPQ +F GT R N+DP ++ D++IW+ D+ L + + G LD + + G S G +QL+CL R +L + KIL+LDE +A +D T +I+++L+Q F+DCTVI HRI ++++ L++ + +YDS Sbjct: 1206 WPSGGQITVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTEGEIQVDGVSWESVTVQQWRRA-FGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGNLDFVLVDGGFVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRALKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1428 The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 455
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bpback to top |