FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15295 contig Ccv1_Contig15295:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_MACFA (Cystic fibrosis transmembrane conductance regulator OS=Macaca fascicularis GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CALMO (Cystic fibrosis transmembrane conductance regulator OS=Callicebus moloch GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 76/224 (33.93%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D+++W+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1204 WPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSVTLQQW-RKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEVWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CALJA (Cystic fibrosis transmembrane conductance regulator OS=Callithrix jacchus GN=CFTR PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTIKDLTAKYIEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFTGTFRKNLDPYEQWSDQEIWKVADEVGLRTVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRALKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_PANTR (Cystic fibrosis transmembrane conductance regulator OS=Pan troglodytes GN=CFTR PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.760e-36
Identity = 76/229 (33.19%), Postives = 128/229 (55.90%), Query Frame = 1
Query:   10 RPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            + ++ WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D     +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1199 KKDYIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVAYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDS 1426          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_ATEAB (Cystic fibrosis transmembrane conductance regulator OS=Atelerix albiventris GN=CFTR PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.760e-36
Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E++ D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++++Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1207 WPSGGQMTVKDLTAKYIESGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTIKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1429          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_HORSE (Cystic fibrosis transmembrane conductance regulator OS=Equus caballus GN=CFTR PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 76/224 (33.93%), Postives = 124/224 (55.36%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP  ++ D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGNVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CARPS (Cystic fibrosis transmembrane conductance regulator OS=Carollia perspicillata GN=CFTR PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WP  G++ +++L  +Y  +   +L  IS +    ++ G++GRTGSGKSTL+  L R++                      R    +IPQ   +F GT R N+DP E++ DE+IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1206 WPLGGQMTIKNLIAKYTDNGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTEGEIQIDGVSWDSVTLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWNDEEIWKVADEVGLRSVIEQFPGKLDFVLLDGGFVLSHGHKQLLCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQQFLVIEENKVRQYDS 1428          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_SHEEP (Cystic fibrosis transmembrane conductance regulator OS=Ovis aries GN=CFTR PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.283e-35
Identity = 77/224 (34.38%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+    R++                      R    +IPQ   +F GT R N+DP E+++D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1205 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTKGEIQIDGVSWDSITLQQW-RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 1427          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.283e-35
Identity = 78/232 (33.62%), Postives = 129/232 (55.60%), Query Frame = 1
Query:    1 RKSRPNHSWPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            R  R +  WPS G++ ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+  L R+V                      R    +IPQ   +F GT R N+DP  ++ D++IW+  D+  L   + +  GKLD  + + G   S G +QL+CL R +L++ KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +++S
Sbjct: 1199 RHVREDDIWPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLVNTEGEIQIDGVSWDSIPLQEWRRA-FGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLRKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEDSRLRQFES 1429          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: CFTR_RHIFE (Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum GN=CFTR PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 77/224 (34.38%), Postives = 124/224 (55.36%), Query Frame = 1
Query:   25 WPSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEYDS 696
            WPS G+I ++DL  +Y      +L  IS +    ++ G++GRTGSGKSTL+  L R++                      R    +IPQ   +F GT R N+DP  ++ D++IW+  D+  L   + +  G LD  + + G   S G +QL+CL R +L + KIL+LDE +A +D  T  +I+++L+Q F+DCTVI   HRI ++++    L++    + +YDS
Sbjct: 1206 WPSGGQITVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTEGEIQVDGVSWESVTVQQWRRA-FGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGNLDFVLVDGGFVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRALKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDS 1428          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
CFTR_MACFA4.411e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CALMO4.411e-3633.93Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CALJA4.411e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PANTR5.760e-3633.19Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ATEAB5.760e-3633.93Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HORSE9.826e-3633.93Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CARPS9.826e-3634.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_SHEEP1.283e-3534.38Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CANFA1.283e-3533.62Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_RHIFE1.676e-3534.38Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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