FC931260

Overview
NameFC931260
Unique NameFC931260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 58/162 (35.80%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  249 IALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            +ALNP   I  KL +   +SH+   FRF      + LGL V   I   A +      + K  +R YTP S  +  G+FDL++KVY +         G MSQH  SL  G +V+VKGP+  + Y           P   K + MI+G    TP+ QV++AILK
Sbjct:  665 VALNPRVKIPCKLIEKVSLSHDVRRFRFGLPSEDQVLGLPVGKHIFLCANV------DDKLCMRAYTPSSTIDVVGYFDLVVKVYFKDVHPRFPNGGVMSQHLDSLSLGSIVDVKGPLGHIEYLGKGNFTVHGKPKFAKKLAMISGGTGITPIYQVMQAILK 820          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 55/161 (34.16%), Postives = 78/161 (48.45%), Query Frame = 3
Query:  258 NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS----------PNMKKHIGMIAGWHRYTPMLQVIEAILKIQ 680
            NP + +  +L D   +SHN  LFRF+   P  KLGL V   +   A  G       K  +R YTP S  E  GH +LLIK+Y           G MSQ+  +L  G  V++KGP+  + Y+              + + M+AG    TP+ QVI+A+L+ Q
Sbjct:  628 NPREKVRCRLVDKKSMSHNVRLFRFALPSPDQKLGLPVGKHVYVCASTGG------KLCMRAYTPTSSVEEVGHVELLIKIYFKDEDPKFPAGGLMSQYLDALPLGAPVDIKGPVGHIEYAGRGAFTVGGERRFARRLAMVAGGTGITPVYQVIQAVLRDQ 782          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 68/192 (35.42%), Postives = 91/192 (47.40%), Query Frame = 3
Query:  189 YFSSPNL-VH--------LDQINEETGPK-IAL-NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAIL 671
            Y SSPN+ VH        L  I E    K IAL NP + +   L +   +SH+   FRF+      +LGL V   I   A +      N K  +R YTP S  +A GH DL++KVY +         G MSQH  SL  G V+ +KGP+  + Y           P   K + M+AG    TP+ QVI++IL
Sbjct:  618 YDSSPNVSVHGGSTAVSLLAPIKELAPSKNIALVNPREKVPVTLIEKTSISHDVRRFRFALPSEDQQLGLPVGKHIFLCANI------NDKLCLRAYTPTSTVDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSVLNIKGPLGHIEYLGKGNFMVTGKPKFAKKLAMLAGGPGITPIYQVIQSIL 803          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  204 NLVHLDQINEE-TGPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFD--PSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK---------MSQHFASLKPGDVVEVKGPIEKLRYS----------PNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            N  HL  I E     ++AL P++ I  KL     +SH+  +FRF+        LGL V   I   A +      + K  +R YTP S  +  G F+L++KVY +G          MSQ+  S++ G  ++VKGP+  + Y+          P   + + M+AG    TP+ QV++AILK
Sbjct:  640 NFSHLAPIREAPVSRRVALAPNEKIPCKLISKTSISHDVRVFRFALPGGQDQALGLPVGKHIFICATV------DGKLCMRAYTPTSSIDEMGFFELVVKVYFKGVHPKFPNGGIMSQYLDSMEVGSTLDVKGPLGHIEYTGRGNFMVHGKPRFARRLAMLAGGTGITPIYQVVQAILK 812          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 60/177 (33.90%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  210 VHLDQINEETGP--KIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGK---------MSQHFASLKPGDVVEVKGPIEKLRYS----------PNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            + L  I E   P   +AL P + I  KL     +SH+  LFRF       L GL V   I     + +      K  +R YTP S     G+FDL++KVY +G          MSQH  SL  G V++VKGP+  + Y+          P     + M+AG    TP+ QV++AILK
Sbjct:  610 IPLTPIKEVITPMRSVALIPREKIPCKLISKTSISHDVRLFRFGLPSDGLLMGLAVGKHIFLCVTVDE------KLCMRAYTPTSSVHEVGYFDLVVKVYFKGVHPKFPNGGIMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVHGKPRFATRLAMLAGGTGITPIYQVVQAILK 780          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R2_MOUSE (NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=Cyb5r2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 56/165 (33.94%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  258 NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV--------YPE-GKMSQHFASLKPGDVVEVKGPIEKLRYS--------------PNMK--KHIGMIAGWHRYTPMLQVIEAILK 674
            +P+      L +  ++SHN+  FRF    P   LGL V + +   A +      N + V+R YTP+S  + +G  DL+IK+        YPE GKM+Q+  ++K GD +  +GP  +L Y+              P  K   H+GMIAG    TPMLQ+I  I K
Sbjct:   13 DPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQI------NNELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITK 171          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 68/199 (34.17%), Postives = 93/199 (46.73%), Query Frame = 3
Query:  153 IAAVAGGVSYYCYFSSPNLVHLDQINEET---GPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PE-GKMSQHFASLKPGDVVEVKGPIEKLRYS----------PNMKKHIGMIAGWHRYTPMLQVIEAILKIQ 680
            I   AG  S      + NL  L  I E      P    +P   +  +L D   +S +  LFRF+   S + LGL V   I   A +    EG  K  +R YTP S  +  GHFDLLIKVY        P+ G M+Q+  SL  G  ++VKGP+  + Y+          P   + + MIAG    TPM QVI+++L+ Q
Sbjct:  616 ITTGAGYSSDNSVHGASNLSQLAPIREAIKAPAPVALSSPRDKVPCQLVDKKELSRDVRLFRFALPSSDQVLGLPVGKHIFVCASI----EG--KLCMRAYTPTSMVDEVGHFDLLIKVYFKNEHPKFPDGGLMTQYLDSLPVGAYIDVKGPLGHVEYTGRGEFVINGKPRNARRLAMIAGGSGITPMYQVIQSVLRDQ 808          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA_PICAN (Nitrate reductase [NADPH] OS=Pichia angusta GN=YNR1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 53/173 (30.64%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  204 NLVHLDQINEETGPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV------YPEGK-MSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAI 668
            ++  +  + +    ++ L+P KW    L +   +S +S +F+F  + S +L GL     +  R    +D+ G  KYV+R YTP S    +G  ++LIKV      YP G  M+    +L+ G+ +EVKGP+ +  Y           P   KH  MI+G    TP  QV++AI
Sbjct:  582 SVTKVKSVEQNVKREVLLDPRKWHKITLAEKEVISSDSRIFKFDLEHSEQLSGLPTGKHLFLRL---KDSSG--KYVMRAYTPKSSNSLRGRLEILIKVYFPNREYPNGGIMTNLIENLQVGNQIEVKGPVGEFEYVKCGHCSFNNKPYQMKHFVMISGGSGITPTYQVLQAI 749          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R2_RAT (NADH-cytochrome b5 reductase 2 OS=Rattus norvegicus GN=Cyb5r2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 55/165 (33.33%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  258 NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKV--------YPE-GKMSQHFASLKPGDVVEVKGPIEKLRYS--------------PNMK--KHIGMIAGWHRYTPMLQVIEAILK 674
            +P+      L +  +++HN+  FRF    P   LGL V + +   A +      N + V+R YTP+S  + +G  DL+IK+        YPE GKM+Q+  ++K GD +  +GP  +L Y+              P  K   H+GMIAG    TPMLQ+I  I K
Sbjct:   13 DPEAKYPLPLIEKEQINHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQI------NNELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLLIKTDKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITK 171          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  246 KIALNPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRYS----------PNMKKHIGMIAGWHRYTPMLQVIEAILKIQMTHSGVTAVW 710
            K+AL P + I  KL     +SH+  +FRF+      +LGL V   I   A +      + K  +R YTP S  +  G+F+L++KVY +         G MSQH  SL  G  ++VKGP+  + Y+              K + M+AG    TP+ QV +AILK    H+ +  V+
Sbjct:  638 KVALIPREKIPCKLISRTSISHDVRVFRFALPSEDQQLGLPVGKHIFLCATV------DGKLCMRAYTPTSGVDEVGYFELVVKVYFKGVHPKFPNGGAMSQHLDSLPIGSDLDVKGPLGHIEYTGRGNFLVHGKHRFAKKLAMLAGGTGITPIYQVAQAILKDPEDHTKMYVVY 806          
The following BLAST results are available for this feature:
BLAST of FC931260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
NIA_SPIOL7.780e-1535.80Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA7_HORVU1.016e-1434.16Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]
NIA2_BRANA1.733e-1435.42Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA_CUCMA3.861e-1431.84Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA1_SOYBN5.043e-1433.90Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NB5R2_MOUSE5.043e-1433.94NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=... [more]
NIA1_ORYSJ6.586e-1434.17Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NIA_PICAN1.123e-1330.64Nitrate reductase [NADPH] OS=Pichia angusta GN=YNR... [more]
NB5R2_RAT1.123e-1333.33NADH-cytochrome b5 reductase 2 OS=Rattus norvegicu... [more]
NIA_LOTJA1.467e-1332.57Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]

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Properties
Property NameValue
Genbank descriptionC34103C03EF PostHarvP1 Citrus clementina cDNA clone C34103C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931260 ID=FC931260; Name=FC931260; organism=Citrus clementina; type=EST; length=727bp
GACTTTTCTTTGCTTTGCTTCTTCTCCAACATTAGAAAATGGCTACGACC
TTCTTCAGAAGACTGGCTAAAGCTACTCCAATTGCATTCAACGAGGCATT
TGGAGGGCAACCCAAGTCCGATTTCAACAAATTTCGATTTCCCTTTGGAG
CAATCGCTGCTGTTGCTGGTGGAGTCTCCTATTACTGTTACTTTTCATCC
CCAAATTTGGTTCATCTAGATCAAATCAATGAAGAGACGGGTCCAAAAAT
TGCTCTCAATCCGGACAAGTGGATTGGATTTAAGTTGCAAGACACTGCAA
GGGTAAGCCACAATAGTCATTTGTTCAGGTTTTCATTTGATCCATCTGCC
AAGTTGGGTTTGGATGTTGCTTCATGCATCCTTACAAGGGCTCCATTAGG
ACAAGATGCTGAAGGAAATACAAAATATGTTGTACGGCCGTATACTCCTA
TATCAGATACAGAAGCTAAGGGACACTTTGACTTGTTAATTAAGGTTTAT
CCTGAGGGTAAAATGAGTCAGCATTTTGCTAGCTTAAAACCAGGGGATGT
AGTTGAAGTGAAAGGACCCATTGAAAAGCTCCGATACTCTCCCAATATGA
AGAAACACATCGGCATGATAGCTGGGTGGCACAGGTATACTCCTATGCTT
CAGGTAATTGAGGCTATACTGAAGATCCAGATGACACACTCAGGTGTCAC
TGCTGTATGGCATATATCCCAGATGAT
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