FC931261

Overview
NameFC931261
Unique NameFC931261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.870e-20
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   19 EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGV 354
            E+   F   PE   L+T PSQ+Q   VMA LD+LS+H+ DEEY+G   EPAW+ D  ++ AF+ F+ K+ ++   ++  N D   RNR+GAG+VPY LL+P +   +  K V
Sbjct:  810 EEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTV 921          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   37 LEK-PENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            LEK P+   L T  +Q+Q    ++++++LSTHS DE YLG+     W  +     AFEKF  K+ E+E  ID RN D  L+NR G   +PY LL P SE GVTG+G+P
Sbjct:  747 LEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIP 854          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 48/123 (39.02%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 357
            +P  E++      PE A ++T  SQIQ    +++L+VLS HS DE YLG+   P W  DP     F++F  +L+E+E  +   N DP+L+NRNG    PY LL P +        G+T KG+P
Sbjct:  735 EPGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTPEWTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIP 857          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.751e-18
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            +P   +++   + P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAFE+F  KL ++E  I  RN +  L NR G    PY LL P SE G+TGKG+P
Sbjct:  739 EPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIP 855          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.286e-18
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            +P   +++     P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAF++F  KL ++E  I  RN D  L NR+G    PY LL P SE G+TGKG+P
Sbjct:  740 EPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.900e-18
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   37 LEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            ++ P+ A L T   + +    ++++++LS H+ DE YLG+   P W  D     AF++F  KL  +EG I+ARN+DP LRNR G   +PY LL   SE G+T KG+P
Sbjct:  753 VKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIP 859          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 357
            +P  E +      PE A + T  SQ+Q    +++++VLS HS DE YLG+   PAW  D     AF +F  +L+E+EG +   N D  L+NRNG    PY LL P +        G+T KG+P
Sbjct:  739 EPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIP 861          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   22 QWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            +++  ++ P+ A L T   + Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN D KLRNR+G   +PY LL P S+ G+T +G+P
Sbjct:  745 EFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIP 856          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   40 EKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            + P+ A L T   + Q    ++++++LS H+ DE YLG+   P W  D     AF++F  KL ++E  +  RN D KLRNR G   +PY LL P S+ G+T +G+P
Sbjct:  747 KNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIP 852          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.140e-16
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   22 QWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLR-NRNGAGMVPYELLKPFSEPGVTGKGVP 357
            +++  +   E A L T  S++     ++++++LSTH+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN DP L+ NR G   +PY LL P SE G+T +G+P
Sbjct:  722 EYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIP 834          
The following BLAST results are available for this feature:
BLAST of FC931261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX22_HORVU1.870e-2042.86Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX1_ARATH6.017e-1945.37Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX1_HORVU7.858e-1939.02Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOXA_SOLLC1.751e-1839.32Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU2.286e-1839.32Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXX_SOYBN3.900e-1841.12Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX3_ORYSJ1.936e-1738.21Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX3_PEA3.302e-1738.39Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_SOYBN1.639e-1638.68Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOYBN2.140e-1638.94Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34103C04EF PostHarvP1 Citrus clementina cDNA clone C34103C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931261 ID=FC931261; Name=FC931261; organism=Citrus clementina; type=EST; length=468bp
ACTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGA
AAATGCACTTTTGAATACCTTCCCTTCCCAGATTCAAGCTACTAAAGTTA
TGGCTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTATTTA
GGAAAAGAAATAGAGCCAGCATGGCGTGAGGATCCGGTTATAAATGCAGC
ATTTGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTGATG
CAAGGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATGGTG
CCATATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAAAGG
AGTTCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATCGCT
CGAATGTTGTATCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAATCA
AATAAATTGCAGTTAATG
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