FC931261

Overview
NameFC931261
Unique NameFC931261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.062e-15
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 357
            +P  +++    E PE   + T  SQ Q    ++++++LS HS DE YLG+   P W  DP    AF++F  +L+E+E  +   N DP L+NR G    PY L+ P +        G+T +G+P
Sbjct:  736 EPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIP 858          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.387e-15
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            +P   +++     P+   L TF  Q+Q+   ++I +V S H+ DE YLG+     W +D     AFE+F   L ++E  I   N+    +NR+G   VPY LL P SE G+TGKG+P
Sbjct:  738 EPGSVEYEELKTNPDKVFLKTFVPQLQSLLEISIFEVSSRHASDEVYLGQRDSIEWTKDKEPLVAFERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEEGLTGKGIP 854          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.366e-15
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   49 ENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIE-PAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            E A L T   +      + I++VLS H+ DE+YLG+ IE   W  D V   AF++F  KL E+E  +  RN D  LRNR G   +PY LL P SE G+T +G+P
Sbjct:  758 EKAYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIP 861          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   37 LEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            ++  + A L T   + Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  +N DP L +R G   +PY LL P S+ G+T +G+P
Sbjct:  753 VKSSQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKEGLTFRGIP 859          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 44/122 (36.07%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFS-----EPGVTGKGVP 357
            +P  +++    E  + A L T   Q+Q    ++I+++LS HS DE YLG+   P W  D     AF++F  +L  +E  I  RN D + +NR G   +PY LL P +     E G+TGKG+P
Sbjct:  760 EPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIP 881          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE-PGVTGKGVP 357
            +P  +++       + A L T   +++A   ++++++LS H+ DE YLG+   P W  +     AF++F  KL E+E  I  RN D  LRNRNG   +PY +L P  E  G+T +G+P
Sbjct:  740 EPGTKEYGELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRDNPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDEGLTFRGIP 857          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   22 QWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            +++  ++  + A L T  S+ Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  +N D  L NR G   +PY LL P SE G+T +G+P
Sbjct:  750 EYEEMVKSHQKAYLRTITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE-GLTCRGIP 860          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 357
            +P  +++      PE   + T   Q+QA   +++L++LS HS DE YLG+   P W  D     AF++F  +L E+E  + A N DP  +NR G    PY LL P +        G++ +G+P
Sbjct:  743 EPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTPEWTSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIP 865          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   40 EKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLG-KEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            + PE   L T   + +    + ++++LS H+ DE YLG ++    W  D     AF++F  KL E+E  +  +N D  LRNR G   +PY LL P SE G+T +G+P
Sbjct:  742 KNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIP 848          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.198e-12
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   40 EKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE-------PGVTGKGVP 357
            ++ +   ++T  SQ Q    ++++++LS HS DE YLG+   P W  D     AF++F  +L+++E  I   N +  L+NRNG   +PY LL P +         G+T  G+P
Sbjct:  760 DEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIP 872          
The following BLAST results are available for this feature:
BLAST of FC931261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_ORYSJ1.062e-1534.15Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOXB_SOLLC1.387e-1536.75Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_LENCU2.366e-1543.27Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX2_PEA4.036e-1536.45Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX5_ARATH1.174e-1436.07Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXA_PHAVU1.534e-1434.75Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX2_SOYBN1.534e-1436.61Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX2_ORYSJ1.534e-1433.33Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX4_SOYBN2.448e-1236.45Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX4_ORYSJ3.198e-1232.74Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC34103C04EF PostHarvP1 Citrus clementina cDNA clone C34103C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931261 ID=FC931261; Name=FC931261; organism=Citrus clementina; type=EST; length=468bp
ACTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGA
AAATGCACTTTTGAATACCTTCCCTTCCCAGATTCAAGCTACTAAAGTTA
TGGCTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTATTTA
GGAAAAGAAATAGAGCCAGCATGGCGTGAGGATCCGGTTATAAATGCAGC
ATTTGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTGATG
CAAGGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATGGTG
CCATATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAAAGG
AGTTCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATCGCT
CGAATGTTGTATCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAATCA
AATAAATTGCAGTTAATG
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