FC931264

Overview
NameFC931264
Unique NameFC931264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15351 contig Ccv1_Contig15351:261..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931264 vs. ExPASy Swiss-Prot
Match: PCKA_PSEP1 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pckA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.468e-53
Identity = 104/226 (46.02%), Postives = 141/226 (62.39%), Query Frame = 3
Query:    3 LFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGAKEP-RATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLV 677
            +FS+ ++L+P   +L +H   N+G++GDV                D +RYLIGDDEH W +  V N+EGGCYAKCIDLS + EP IW AIK G VLEN+V D + +  DY D S+T+N+RAAYP+E++       +G  P  +I L CD  GVLPPVS L+ EQ  YHF+SGYTALV  TE G+    ++TFS CFGA F      +YA +L +++    +  +LV
Sbjct:  187 MFSVQNFLLPAADVLPMHCAANIGEEGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNMEGGCYAKCIDLSEKNEPVIWKAIKHGAVLENVVLDAN-KHADYTDVSLTQNSRAAYPLEHVAKRSEANLGGEPNAVIFLTCDLTGVLPPVSILNNEQAAYHFLSGYTALVGSTEMGSGGGIKSTFSTCFGAPFFPRPAGEYAELLIKRINGFNSKVYLV 411          
BLAST of FC931264 vs. ExPASy Swiss-Prot
Match: PCKA_WIGBR (Phosphoenolpyruvate carboxykinase [ATP] OS=Wigglesworthia glossinidia brevipalpis GN=pckA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-52
Identity = 108/230 (46.96%), Postives = 144/230 (62.61%), Query Frame = 3
Query:    3 LFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIP-CVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGAKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGA------TGW 671
            LFS+M+Y++P + I S+H   N G   DVA               D  RYLIGDDEH W  +GV N EGGCYAK I+LS EKEP+I+NAIK   +LEN++  + +  +++ D + TEN+R +YPI +I N   P     HPKNII L  DAFGV P VSKLS  Q  Y+F+SG+T+ ++GTE G  +P  TFS+CFG AF+ LHPT YA +L   ++ + +      TGW
Sbjct:  214 LFSVMNYILPLKNIASMHCSANEGFKKDVALFFGLSGTGKTTLSTDSKRYLIGDDEHGWCKDGVFNFEGGCYAKTINLSEEKEPEIFNAIKKNAILENVMVLKDS-NINFFDGTKTENSRVSYPINHIKNIVKPISQSGHPKNIIFLTADAFGVFPFVSKLSYFQGQYYFLSGFTSKLSGTERGIIDPEPTFSSCFGEAFLSLHPTVYAKILLRYIKYYNSKIFLVNTGW 442          
BLAST of FC931264 vs. ExPASy Swiss-Prot
Match: PCKA_PSEE4 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas entomophila (strain L48) GN=pckA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-52
Identity = 105/226 (46.46%), Postives = 141/226 (62.39%), Query Frame = 3
Query:    3 LFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGAKEP-RATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLV 677
            +FS+ ++L+P   +L +H   N+G+ GDV                D +RYLIGDDEH W +  V NIEGGCYAKCIDLS + EP IW AIK G VLEN+V D + +  DY D S+T+N+RAAYP+E++       +G  P  +I L CD  GVLPPVS L+ EQ  YHF+SGYTALV  TE G+    ++TFS CFGA F      +YA +L ++++   +  +LV
Sbjct:  187 MFSVQNFLLPAADVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNIEGGCYAKCIDLSEKNEPVIWKAIKHGAVLENVVLDGN-QHADYADVSLTQNSRAAYPLEHVAKRSEKNLGGEPNAVIFLTCDLTGVLPPVSILNNEQAAYHFLSGYTALVGSTEMGSGGGIKSTFSTCFGAPFFPRPAGEYAELLIKRIKGFDSKVYLV 411          
BLAST of FC931264 vs. ExPASy Swiss-Prot
Match: PCKA_BAUCH (Phosphoenolpyruvate carboxykinase [ATP] OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=pckA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.347e-51
Identity = 105/226 (46.46%), Postives = 142/226 (62.83%), Query Frame = 3
Query:    3 LFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPC-VGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGAKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLV 677
            LF++M+Y +P + I S+H   N+G + DVA               D NR LIGDDEH W ++G+ N+EGGCYAK I+L  E EP+I+ AI+   +LEN++       V+Y D S T+N R +YP+ +I N   P     H   II L  DAFGVLPPV+ L+ EQ  Y+F+SG++A ++GTE G   P  TFSACFGAAF+ LHPT YAA+LA++M   G   +LV
Sbjct:  213 LFTVMNYHLPLKGIASMHCSANVGINKDVALFFGLSGTGKTTLSHDTNRALIGDDEHGWDNDGIFNLEGGCYAKTINLKPELEPEIFQAIRCNALLENVMV-RADGSVNYHDNSKTDNARVSYPLNHIKNRVQPVSCASHASTIIFLTADAFGVLPPVATLTNEQAQYYFLSGFSAKLSGTERGIISPVPTFSACFGAAFLALHPTVYAALLAKRMNIAGTNAYLV 437          
The following BLAST results are available for this feature:
BLAST of FC931264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_PSEP15.468e-5346.02Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_WIGBR1.218e-5246.96Phosphoenolpyruvate carboxykinase [ATP] OS=Wiggles... [more]
PCKA_PSEE41.218e-5246.46Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_BAUCH1.347e-5146.46Phosphoenolpyruvate carboxykinase [ATP] OS=Baumann... [more]

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Properties
Property NameValue
Genbank descriptionC34103C07EF PostHarvP1 Citrus clementina cDNA clone C34103C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931264 ID=FC931264; Name=FC931264; organism=Citrus clementina; type=EST; length=724bp
GTCTATTCAGCTTAATGCATTACCTAATGCCTAAACGTCAAATCCTCTCC
CTCCACTCTGGCTGCAATATGGGAAAAGATGGGGATGTTGCCCTTTTCTT
CGGACTATCCGGTACTGGGAAGACAACTCTGTCTACTGATCATAACCGGT
ACTTAATTGGAGATGATGAGCACTGCTGGAGTGATAATGGAGTATCAAAC
ATTGAAGGCGGGTGCTATGCCAAATGCATTGATCTTTCAAGGGAGAAGGA
GCCTGATATCTGGAATGCCATCAAATTCGGGACTGTGCTAGAAAACATTG
TGTTTGATGAGCATACACGAGAAGTGGACTACTTGGACAAATCTGTCACG
GAGAACACTCGTGCCGCGTATCCCATAGAGTATATCCCAAATGCAAAGAT
ACCTTGTGTTGGCCCTCATCCAAAGAATATAATCCTTTTGGCTTGTGATG
CATTTGGTGTACTCCCACCTGTGAGCAAGTTGAGCTTGGAACAGACCATG
TACCACTTCATCAGTGGCTACACTGCTCTGGTTGCTGGAACAGAGGAAGG
TGCGAAGGAGCCACGGGCAACATTCTCAGCCTGTTTTGGTGCCGCATTTA
TAATGCTACACCCTACAAAGTATGCTGCCATGCTGGCTGAAAAAATGCAG
AAGCATGGGGCTACTGGATGGTTGGTTACACTGGCTGGTCAGGTGGAAGC
TATGGGTCNAGAATCGTATTAATT
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