FC931267

Overview
NameFC931267
Unique NameFC931267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: ABCC9_DICDI (ABC transporter C family member 9 OS=Dictyostelium discoideum GN=abcC9 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.108e-47
Identity = 95/231 (41.13%), Postives = 145/231 (62.77%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WP  G+I+F +V + Y     P L  ++F++  ++K+GIVGRTGAGKS++ N LFR+VE  +G ILIDG DI    L  LR  LGI+PQ P LFSGT+R N+DP +++ D  +W  LE   LK  I    L L++++ E G    S GQ+Q            K++++DEAT++VD +T   I+  I E   + T+L IAHRL+ IID D+I ++D+ +++ ++ P+ L++
Sbjct: 1097 WPEKGNIQFNNVQVNYNSNSVPSLKDITFSVESNEKIGIVGRTGAGKSTIANCLFRLVECSKGSILIDGIDIKTIDLNKLRGSLGIVPQEPWLFSGTIRSNIDPLNQYDDEMIWNYLEMVKLKKLIIEMPLKLNSKIHENGNTTLSYGQKQLLCLCRCLIKNPKLIIMDEATSSVDFQTAETIKSVINENLVNNTILTIAHRLDIIIDSDKIAVIDNSKLIEFENPKNLIN 1327          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: NFT1_YEAST (ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.754e-47
Identity = 103/253 (40.71%), Postives = 140/253 (55.34%), Query Frame = 3
Query:   36 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-------------------KDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            PP  WP +G ++ +++ LRY P     L  +SF +    KVGIVGRTGAGKSS++  ++R+ + E G I ID  DI    L  LR  +  IPQ P LF GTVR NLDPF  +SD  ++  L +  L                      +R   + L+  V   G N S GQRQ             I+++DEATA++D  +DA IQKTIRE  K+ T+L IAHRL ++ID D+IL+++ GRV  YD P  L+S
Sbjct: 1275 PPANWPQTGDVELKNLSLRYSPHSSKALDNVSFKVKAGTKVGIVGRTGAGKSSIIAAIYRLSDWENGTITIDNKDIKHIPLERLRNSISCIPQDPTLFDGTVRSNLDPFDRYSDVQIYGVLSKVGLIEECDELCLIFEQEQPNFSSHKLRNRFIDLNTVVKSGGSNLSQGQRQLLCLARSMLGARNIMLIDEATASIDYISDAKIQKTIRETMKNTTILTIAHRLRSVIDYDKILVMEMGRVKEYDHPYTLIS 1527          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.671e-44
Identity = 100/236 (42.37%), Postives = 140/236 (59.32%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA---HLKDAIRRNSLG-----LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEEL 731
            WP+ G +  +++ + Y      VL  ++  I P +K+ IVGRTG+GKS+M  TL R   +  G + +DG DI    L  LR+ + +IPQ PVL SGTVR NLDPF E+ D +L E L+ A    L  A  +NSL      LD  V   G NFS GQRQ            +I++LDE+TA+VD  TD  IQ+ +R  FK  T+L IAHR+ TI+D D++L+LDSG+ + + +P+ L
Sbjct: 1174 WPTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSL 1409          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: ABC4_SCHPO (ATP-binding cassette transporter abc4 OS=Schizosaccharomyces pombe GN=abc4 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.414e-43
Identity = 102/249 (40.96%), Postives = 137/249 (55.02%), Query Frame = 3
Query:    6 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS-------LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEEL 731
            + P    + + P  WP  G I F  V + Y    P +L  ++  I PS+KV +VGRTG+GKS++  TL R      G I I+G +     L  LR+ +  IPQ P+LFSGTVR NLDPF E  D  L EAL+ +     I  ++       + LD  V+  G NFS GQ+Q            KI++LDE TA+VD   D  IQKT+RE F   TML IAHRL TI+D D++++LD G ++ Y  P  L
Sbjct: 1192 QEPAPTIAGQVPATWPKEGDIVFNHVSVSYSAAGPTILKDVNLHINPSEKVAVVGRTGSGKSTLGLTLLRFTHRISGEIYINGRETQSVNLNALRQRISFIPQDPILFSGTVRSNLDPFDELEDNFLNEALKTSGASSMIMAHTDDQKPIHITLDTHVASEGSNFSQGQKQVLALARAIVRRSKIIILDECTASVDDAMDQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVL 1440          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: EXP8_STRPN (Putative ABC transporter ATP-binding protein exp8 OS=Streptococcus pneumoniae GN=exp8 PE=3 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 4.708e-39
Identity = 88/227 (38.77%), Postives = 133/227 (58.59%), Query Frame = 3
Query:   60 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLSM 740
            G+I+FE V   Y  +  P+L  +SF++   + +  VG TG+GKSS++N L R  E + GR+L+D  DI  F   +LRK +G++ Q P L+ GT++ N+  + E SD  +  A         I+    G D+ VSE G +FS GQRQ            KIL+LDEATA +D  T++L+Q ++ +  +  T + IAHRL+TI D + I +LD GR++   T EELL++
Sbjct:  339 GNIRFEHVCFSYDGK-HPILDDISFSVNKGETIAFVGHTGSGKSSIINVLMRFYEFQSGRVLLDDVDIRDFSQEELRKNIGLVLQEPFLYHGTIKSNIAMYQETSDEQVQAAAAFVDADSFIQELPQGYDSPVSERGSSFSTGQRQLLAFARTVASQPKILILDEATANIDSETESLVQASLAKMRQGRTTIAIAHRLSTIQDANCIYVLDKGRIIESGTHEELLAL 564          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_OTOGA (Cystic fibrosis transmembrane conductance regulator OS=Otolemur garnettii GN=CFTR PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.030e-39
Identity = 82/230 (35.65%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  RY      +L  +SF+I P  +VG++GRTGAGKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++  +V  YD+ ++LLS
Sbjct: 1206 WPSGGQMTVKDLTARYIDSGNAILENISFSISPGQRVGLLGRTGAGKSTLLSAFLRLLNTE-GDIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQKLLS 1434          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_CERAE (Cystic fibrosis transmembrane conductance regulator OS=Cercopithecus aethiops GN=CFTR PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.049e-38
Identity = 80/230 (34.78%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y     P+L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++WE  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWEVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MICMU (Cystic fibrosis transmembrane conductance regulator OS=Microcebus murinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 81/230 (35.22%), Postives = 131/230 (56.96%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  RY      +L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++   V  YD+ ++LLS
Sbjct: 1205 WPSGGQMTVKDLTARYLDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENNVRQYDSIQKLLS 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_PAPAN (Cystic fibrosis transmembrane conductance regulator OS=Papio anubis GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y     P+L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MACNE (Cystic fibrosis transmembrane conductance regulator OS=Macaca nemestrina GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y     P+L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433          
The following BLAST results are available for this feature:
BLAST of FC931267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCC9_DICDI2.108e-4741.13ABC transporter C family member 9 OS=Dictyostelium... [more]
NFT1_YEAST2.754e-4740.71ABC transporter NFT1 OS=Saccharomyces cerevisiae G... [more]
ABC1_SCHPO1.671e-4442.37ATP-binding cassette transporter abc1 OS=Schizosac... [more]
ABC4_SCHPO1.414e-4340.96ATP-binding cassette transporter abc4 OS=Schizosac... [more]
EXP8_STRPN4.708e-3938.77Putative ABC transporter ATP-binding protein exp8 ... [more]
CFTR_OTOGA8.030e-3935.65Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CERAE1.049e-3834.78Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MICMU2.336e-3835.22Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PAPAN3.052e-3834.35Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACNE3.052e-3834.35Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionC34103C10EF PostHarvP1 Citrus clementina cDNA clone C34103C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931267 ID=FC931267; Name=FC931267; organism=Citrus clementina; type=EST; length=741bp
CATCAGAGGCTCCACTTGTTATTGAGAGTAACCGTCCCCCTCCTGGGTGG
CCTTCATCAGGATCTATAAAATTTGAGGATGTTGTCCTACGTTATAGGCC
TGAGCTTCCTCCAGTACTGCATGGATTGTCTTTTACAATTCCTCCAAGTG
ATAAAGTAGGAATAGTTGGAAGGACTGGTGCTGGGAAATCTAGCATGCTT
AATACATTATTTAGAATTGTAGAGCTAGAAAGAGGAAGAATCTTGATTGA
TGGTTTTGACATTGCTAAGTTTGGATTGATGGACCTGCGTAAAATACTCG
GTATTATACCACAATCACCAGTTCTTTTCTCAGGAACTGTAAGATTTAAT
CTTGATCCTTTCAGTGAACACAGTGATGCCGATCTTTGGGAGGCCTTAGA
GAGGGCACATTTGAAGGATGCCATACGCAGGAATTCTTTGGGTCTGGATG
CACAGGTCTCGGAGGCAGGGGAGAATTTTAGTGTTGGACAAAGGCAACTA
TTAAGTCTTTCTCGGGCGTTATTGCGGAGATCTAAGATACTTGTTCTTGA
TGAAGCAACTGCAGCTGTTGATGTTAGAACAGATGCACTTATTCAGAAAA
CCATAAGAGAAGAGTTTAAATCATGTACTATGCTTATTATAGCTCACCGT
CTTAATACCATCATTGACTGTGATCGGATTCTTCTGCTTGATTCTGGCCG
GGTTCTTTGATATGATACACCAGAGGAGCTGTTGTCCATGA
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