FC931267

Overview
NameFC931267
Unique NameFC931267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MACMU (Cystic fibrosis transmembrane conductance regulator OS=Macaca mulatta GN=CFTR PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y     P+L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MACFU (Cystic fibrosis transmembrane conductance regulator OS=Macaca fuscata fuscata GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y     P+L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MACFA (Cystic fibrosis transmembrane conductance regulator OS=Macaca fascicularis GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y     P+L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_ATEAB (Cystic fibrosis transmembrane conductance regulator OS=Atelerix albiventris GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 80/230 (34.78%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + +D ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++TI++ F  CT+++  HR+  +++C R L+++  +V  YD+ ++LLS
Sbjct: 1207 WPSGGQMTVKDLTAKYIESGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTIKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQKLLS 1435          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_HORSE (Cystic fibrosis transmembrane conductance regulator OS=Equus caballus GN=CFTR PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.985e-38
Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + +D ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++  +V  YD+ ++LLS
Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGNVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLS 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38
Identity = 85/241 (35.27%), Postives = 135/241 (56.02%), Query Frame = 3
Query:   15 LVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            LVIE+      WPS G +   ++  +Y  +   VL  LSF++    +VG++GRTGAGKS++L+ L R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  E   LK  I +    L+  + + G   S G +Q            KIL+LDE TA +D  T  +I+KT++  F +CT+++  HR+  +++C + L+++   V  +D  ++LL+
Sbjct: 1203 LVIENKHLTKEWPSGGQMMVNNLTAKYTSDGRAVLQDLSFSVNAGQRVGLLGRTGAGKSTLLSALLRLLSTE-GEIQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEEIWKVTEEVGLKSMIEQFPDKLNFVLVDGGYILSNGHKQLMCLARSILSKAKILLLDEPTAHLDPVTFQIIRKTLKHTFSNCTVILSEHRVEALLECQQFLVIEGCSVKQFDALQKLLT 1442          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38
Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+   R++   +G I IDG       L + RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++  +V  YD+ + LLS
Sbjct: 1206 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-KGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQRLLS 1434          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_COLGU (Cystic fibrosis transmembrane conductance regulator OS=Colobus guereza GN=CFTR PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38
Identity = 78/230 (33.91%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y     P+L  +SF+I P  +VG++GRTG+GKS++L+   R++   +G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1205 WPSGGQMTIKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-KGEIQIDGVSWDSVTLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MUSPF (Cystic fibrosis transmembrane conductance regulator OS=Mustela putorius furo GN=CFTR PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L + RK  G+IPQ   +FSGT R NLDP+ + +D ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++  +V  YD+ + LLS
Sbjct: 1208 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSLQRLLS 1436          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_HYLLE (Cystic fibrosis transmembrane conductance regulator OS=Hylobates leucogenys GN=CFTR PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+ L R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1204 WPSGGQMTVKDLSAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432          
The following BLAST results are available for this feature:
BLAST of FC931267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CFTR_MACMU3.052e-3834.35Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACFU3.052e-3834.35Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MACFA3.052e-3834.35Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ATEAB3.052e-3834.78Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HORSE3.985e-3834.35Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_SQUAC6.798e-3835.27Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_DASNO6.798e-3834.35Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_COLGU6.798e-3833.91Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_MUSPF1.514e-3734.35Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HYLLE1.514e-3734.35Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionC34103C10EF PostHarvP1 Citrus clementina cDNA clone C34103C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931267 ID=FC931267; Name=FC931267; organism=Citrus clementina; type=EST; length=741bp
CATCAGAGGCTCCACTTGTTATTGAGAGTAACCGTCCCCCTCCTGGGTGG
CCTTCATCAGGATCTATAAAATTTGAGGATGTTGTCCTACGTTATAGGCC
TGAGCTTCCTCCAGTACTGCATGGATTGTCTTTTACAATTCCTCCAAGTG
ATAAAGTAGGAATAGTTGGAAGGACTGGTGCTGGGAAATCTAGCATGCTT
AATACATTATTTAGAATTGTAGAGCTAGAAAGAGGAAGAATCTTGATTGA
TGGTTTTGACATTGCTAAGTTTGGATTGATGGACCTGCGTAAAATACTCG
GTATTATACCACAATCACCAGTTCTTTTCTCAGGAACTGTAAGATTTAAT
CTTGATCCTTTCAGTGAACACAGTGATGCCGATCTTTGGGAGGCCTTAGA
GAGGGCACATTTGAAGGATGCCATACGCAGGAATTCTTTGGGTCTGGATG
CACAGGTCTCGGAGGCAGGGGAGAATTTTAGTGTTGGACAAAGGCAACTA
TTAAGTCTTTCTCGGGCGTTATTGCGGAGATCTAAGATACTTGTTCTTGA
TGAAGCAACTGCAGCTGTTGATGTTAGAACAGATGCACTTATTCAGAAAA
CCATAAGAGAAGAGTTTAAATCATGTACTATGCTTATTATAGCTCACCGT
CTTAATACCATCATTGACTGTGATCGGATTCTTCTGCTTGATTCTGGCCG
GGTTCTTTGATATGATACACCAGAGGAGCTGTTGTCCATGA
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