FC931267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MACMU (Cystic fibrosis transmembrane conductance regulator OS=Macaca mulatta GN=CFTR PE=2 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38 Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y P+L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MACFU (Cystic fibrosis transmembrane conductance regulator OS=Macaca fuscata fuscata GN=CFTR PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38 Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y P+L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MACFA (Cystic fibrosis transmembrane conductance regulator OS=Macaca fascicularis GN=CFTR PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38 Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y P+L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1205 WPSGGQMTVKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_ATEAB (Cystic fibrosis transmembrane conductance regulator OS=Atelerix albiventris GN=CFTR PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38 Identity = 80/230 (34.78%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + +D ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++TI++ F CT+++ HR+ +++C R L+++ +V YD+ ++LLS Sbjct: 1207 WPSGGQMTVKDLTAKYIESGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTIKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQKLLS 1435
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_HORSE (Cystic fibrosis transmembrane conductance regulator OS=Equus caballus GN=CFTR PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.985e-38 Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + +D ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ +V YD+ ++LLS Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGNVLSHGHKQLICLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLS 1433
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38 Identity = 85/241 (35.27%), Postives = 135/241 (56.02%), Query Frame = 3 Query: 15 LVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 LVIE+ WPS G + ++ +Y + VL LSF++ +VG++GRTGAGKS++L+ L R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ E LK I + L+ + + G S G +Q KIL+LDE TA +D T +I+KT++ F +CT+++ HR+ +++C + L+++ V +D ++LL+ Sbjct: 1203 LVIENKHLTKEWPSGGQMMVNNLTAKYTSDGRAVLQDLSFSVNAGQRVGLLGRTGAGKSTLLSALLRLLSTE-GEIQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEEIWKVTEEVGLKSMIEQFPDKLNFVLVDGGYILSNGHKQLMCLARSILSKAKILLLDEPTAHLDPVTFQIIRKTLKHTFSNCTVILSEHRVEALLECQQFLVIEGCSVKQFDALQKLLT 1442
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_DASNO (Cystic fibrosis transmembrane conductance regulator OS=Dasypus novemcinctus GN=CFTR PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38 Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++ +G I IDG L + RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ +V YD+ + LLS Sbjct: 1206 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-KGEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQRLLS 1434
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_COLGU (Cystic fibrosis transmembrane conductance regulator OS=Colobus guereza GN=CFTR PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38 Identity = 78/230 (33.91%), Postives = 133/230 (57.83%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y P+L +SF+I P +VG++GRTG+GKS++L+ R++ +G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1205 WPSGGQMTIKDLTAKYTEGGNPILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-KGEIQIDGVSWDSVTLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1433
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_MUSPF (Cystic fibrosis transmembrane conductance regulator OS=Mustela putorius furo GN=CFTR PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37 Identity = 79/230 (34.35%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L + RK G+IPQ +FSGT R NLDP+ + +D ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ +V YD+ + LLS Sbjct: 1208 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQEWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSLQRLLS 1436
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_HYLLE (Cystic fibrosis transmembrane conductance regulator OS=Hylobates leucogenys GN=CFTR PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37 Identity = 79/230 (34.35%), Postives = 133/230 (57.83%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ L R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1204 WPSGGQMTVKDLSAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432 The following BLAST results are available for this feature:
BLAST of FC931267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931267 ID=FC931267; Name=FC931267; organism=Citrus clementina; type=EST; length=741bpback to top |