FC931267

Overview
NameFC931267
Unique NameFC931267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14059 contig Ccv1_Contig14059:898..1638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_RHIFE (Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.978e-37
Identity = 77/230 (33.48%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G I  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+ L R++  E G I +DG       +   R+  G+IPQ   +FSGT R NLDP+ + +D ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++ +++ F  CT+++  HR+  +++C R L+++  +V  YD+ ++LLS
Sbjct: 1206 WPSGGQITVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTE-GEIQVDGVSWESVTVQQWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGNLDFVLVDGGFVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRALKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSMQKLLS 1434          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: MSBA_METFK (Lipid A export ATP-binding/permease protein msbA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=msbA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 84/231 (36.36%), Postives = 139/231 (60.17%), Query Frame = 3
Query:   54 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLSM 740
            + GSI FE+V L+Y     P L  L+FT+ P +K+ +VGR+G GK++++N L R  E+++GR+LIDG D+    L  LR+   ++ Q  +LF+ TV  N+        S+ D+  A + AH  D I++   GL +++ + G   S GQRQ             IL+LDEAT+A+D  ++  +Q  + E  ++ T ++IAHRL+TI + DRI++++ GR++   + EELL++
Sbjct:  340 AEGSIVFENVTLQYPSAQRPALLDLNFTVKPGEKIALVGRSGGGKTTLVNLLPRFYEVQQGRVLIDGVDVRNMSLKSLRQQFSLVSQDVILFNDTVFNNIAYGVLRNASEEDVIAAAKAAHAWDFIQQLPNGLQSEIGDRGVRLSGGQRQRLAIARAILKNAPILLLDEATSALDTESERHVQAALDELMQNRTSIVIAHRLSTIENADRIMVMEQGRIIEGGSHEELLAL 570          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_PONAB (Cystic fibrosis transmembrane conductance regulator OS=Pongo abelii GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 78/230 (33.91%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 83/243 (34.16%), Postives = 138/243 (56.79%), Query Frame = 3
Query:   15 LVIESN--RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            L+IE+   +    WPS G +  +D+  +Y    P +L  +SF+I    +VG++GRTG+GKS++L    R++  E G I IDG       +   RK  G+IPQ   +FSG+ R NLDP+ + +D +LW+  E   LK  I +    LD  + + G   S G RQ            KIL+LDE +A +D  T  +I+KT+++ F +CT+++  HR+  +++C R L+++  +V  Y++ ++LL+
Sbjct: 1193 LIIENQHVKREKNWPSGGQMTVQDLTAKYLDGGPAILDNISFSISSGQRVGLLGRTGSGKSTLLFAFLRLLNTE-GDIRIDGISWDAVPVQQWRKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFTNCTVILSEHRIEAMLECQRFLVIEENKVRQYESIQKLLN 1434          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_HUMAN (Cystic fibrosis transmembrane conductance regulator OS=Homo sapiens GN=CFTR PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 78/230 (33.91%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_GORGO (Cystic fibrosis transmembrane conductance regulator OS=Gorilla gorilla gorilla GN=CFTR PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 78/230 (33.91%), Postives = 132/230 (57.39%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+   R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LL+
Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37
Identity = 78/230 (33.91%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L+ L R+V  E G I IDG       L + R+  G+IPQ   +FSGT R NLDP+ + +D ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++  R+  +++ + LLS
Sbjct: 1207 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLVNTE-GEIQIDGVSWDSIPLQEWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLRKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEDSRLRQFESIQRLLS 1435          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_PIG (Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa GN=CFTR PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.374e-37
Identity = 80/230 (34.78%), Postives = 130/230 (56.52%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      VL  +SF+I P  +VG++GRTG+GKS++L    R++  E G I +DG       L   RK  G+IPQ   +FSGT R NLDP+ + +D ++W+  E   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C R L+++  +V  YD+ + LLS
Sbjct: 1206 WPSGGQMTVKDLTAKYVDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTE-GEIQVDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVAEEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLGKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQRLLS 1434          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_CARPS (Cystic fibrosis transmembrane conductance regulator OS=Carollia perspicillata GN=CFTR PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.406e-37
Identity = 77/230 (33.48%), Postives = 133/230 (57.83%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WP  G +  ++++ +Y      +L  +SF+I P  +VG++GRTG+GKS++L+ L R++  E G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + +D ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F  CT+++  HR+  +++C + L+++  +V  YD+ ++LLS
Sbjct: 1206 WPLGGQMTIKNLIAKYTDNGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTE-GEIQIDGVSWDSVTLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWNDEEIWKVADEVGLRSVIEQFPGKLDFVLLDGGFVLSHGHKQLLCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQQFLVIEENKVRQYDSLQKLLS 1434          
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_BOVIN (Cystic fibrosis transmembrane conductance regulator OS=Bos taurus GN=CFTR PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.755e-37
Identity = 78/230 (33.91%), Postives = 131/230 (56.96%), Query Frame = 3
Query:   48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737
            WPS G +  +D+  +Y      +L  +SF+I P  +VG++GRTG+GKS++L    R++   +G I IDG       L   RK  G+IPQ   +FSGT R NLDP+ + SD ++W+  +   L+  I +    LD  + + G   S G +Q            KIL+LDE +A +D  T  +I++T+++ F +CT+++  HR+  +++C R L+++  +V  YD+ + +LS
Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNT-KGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFANCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQRMLS 1433          
The following BLAST results are available for this feature:
BLAST of FC931267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CFTR_RHIFE1.978e-3733.48Cystic fibrosis transmembrane conductance regulato... [more]
MSBA_METFK2.583e-3736.36Lipid A export ATP-binding/permease protein msbA O... [more]
CFTR_PONAB2.583e-3733.91Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_ORNAN2.583e-3734.16Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_HUMAN2.583e-3733.91Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_GORGO2.583e-3733.91Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CANFA2.583e-3733.91Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_PIG3.374e-3734.78Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CARPS4.406e-3733.48Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_BOVIN5.755e-3733.91Cystic fibrosis transmembrane conductance regulato... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103C10EF PostHarvP1 Citrus clementina cDNA clone C34103C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931267 ID=FC931267; Name=FC931267; organism=Citrus clementina; type=EST; length=741bp
CATCAGAGGCTCCACTTGTTATTGAGAGTAACCGTCCCCCTCCTGGGTGG
CCTTCATCAGGATCTATAAAATTTGAGGATGTTGTCCTACGTTATAGGCC
TGAGCTTCCTCCAGTACTGCATGGATTGTCTTTTACAATTCCTCCAAGTG
ATAAAGTAGGAATAGTTGGAAGGACTGGTGCTGGGAAATCTAGCATGCTT
AATACATTATTTAGAATTGTAGAGCTAGAAAGAGGAAGAATCTTGATTGA
TGGTTTTGACATTGCTAAGTTTGGATTGATGGACCTGCGTAAAATACTCG
GTATTATACCACAATCACCAGTTCTTTTCTCAGGAACTGTAAGATTTAAT
CTTGATCCTTTCAGTGAACACAGTGATGCCGATCTTTGGGAGGCCTTAGA
GAGGGCACATTTGAAGGATGCCATACGCAGGAATTCTTTGGGTCTGGATG
CACAGGTCTCGGAGGCAGGGGAGAATTTTAGTGTTGGACAAAGGCAACTA
TTAAGTCTTTCTCGGGCGTTATTGCGGAGATCTAAGATACTTGTTCTTGA
TGAAGCAACTGCAGCTGTTGATGTTAGAACAGATGCACTTATTCAGAAAA
CCATAAGAGAAGAGTTTAAATCATGTACTATGCTTATTATAGCTCACCGT
CTTAATACCATCATTGACTGTGATCGGATTCTTCTGCTTGATTCTGGCCG
GGTTCTTTGATATGATACACCAGAGGAGCTGTTGTCCATGA
back to top