FC931267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_RHIFE (Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum GN=CFTR PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.978e-37 Identity = 77/230 (33.48%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G I +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ L R++ E G I +DG + R+ G+IPQ +FSGT R NLDP+ + +D ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++ +++ F CT+++ HR+ +++C R L+++ +V YD+ ++LLS Sbjct: 1206 WPSGGQITVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTE-GEIQVDGVSWESVTVQQWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGNLDFVLVDGGFVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRALKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSMQKLLS 1434
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: MSBA_METFK (Lipid A export ATP-binding/permease protein msbA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=msbA PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37 Identity = 84/231 (36.36%), Postives = 139/231 (60.17%), Query Frame = 3 Query: 54 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLSM 740 + GSI FE+V L+Y P L L+FT+ P +K+ +VGR+G GK++++N L R E+++GR+LIDG D+ L LR+ ++ Q +LF+ TV N+ S+ D+ A + AH D I++ GL +++ + G S GQRQ IL+LDEAT+A+D ++ +Q + E ++ T ++IAHRL+TI + DRI++++ GR++ + EELL++ Sbjct: 340 AEGSIVFENVTLQYPSAQRPALLDLNFTVKPGEKIALVGRSGGGKTTLVNLLPRFYEVQQGRVLIDGVDVRNMSLKSLRQQFSLVSQDVILFNDTVFNNIAYGVLRNASEEDVIAAAKAAHAWDFIQQLPNGLQSEIGDRGVRLSGGQRQRLAIARAILKNAPILLLDEATSALDTESERHVQAALDELMQNRTSIVIAHRLSTIENADRIMVMEQGRIIEGGSHEELLAL 570
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_PONAB (Cystic fibrosis transmembrane conductance regulator OS=Pongo abelii GN=CFTR PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37 Identity = 78/230 (33.91%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37 Identity = 83/243 (34.16%), Postives = 138/243 (56.79%), Query Frame = 3 Query: 15 LVIESN--RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 L+IE+ + WPS G + +D+ +Y P +L +SF+I +VG++GRTG+GKS++L R++ E G I IDG + RK G+IPQ +FSG+ R NLDP+ + +D +LW+ E LK I + LD + + G S G RQ KIL+LDE +A +D T +I+KT+++ F +CT+++ HR+ +++C R L+++ +V Y++ ++LL+ Sbjct: 1193 LIIENQHVKREKNWPSGGQMTVQDLTAKYLDGGPAILDNISFSISSGQRVGLLGRTGSGKSTLLFAFLRLLNTE-GDIRIDGISWDAVPVQQWRKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFTNCTVILSEHRIEAMLECQRFLVIEENKVRQYESIQKLLN 1434
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_HUMAN (Cystic fibrosis transmembrane conductance regulator OS=Homo sapiens GN=CFTR PE=1 SV=3) HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37 Identity = 78/230 (33.91%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_GORGO (Cystic fibrosis transmembrane conductance regulator OS=Gorilla gorilla gorilla GN=CFTR PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37 Identity = 78/230 (33.91%), Postives = 132/230 (57.39%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LL+ Sbjct: 1204 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEHRIEAMLECQQFLVIEENKVRQYDSIQKLLN 1432
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 2.583e-37 Identity = 78/230 (33.91%), Postives = 133/230 (57.83%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ L R+V E G I IDG L + R+ G+IPQ +FSGT R NLDP+ + +D ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ R+ +++ + LLS Sbjct: 1207 WPSGGQMTVKDLTAKYIDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLVNTE-GEIQIDGVSWDSIPLQEWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLRKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEDSRLRQFESIQRLLS 1435
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_PIG (Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa GN=CFTR PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.374e-37 Identity = 80/230 (34.78%), Postives = 130/230 (56.52%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y VL +SF+I P +VG++GRTG+GKS++L R++ E G I +DG L RK G+IPQ +FSGT R NLDP+ + +D ++W+ E L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C R L+++ +V YD+ + LLS Sbjct: 1206 WPSGGQMTVKDLTAKYVDGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNTE-GEIQVDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVAEEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLGKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQRLLS 1434
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_CARPS (Cystic fibrosis transmembrane conductance regulator OS=Carollia perspicillata GN=CFTR PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.406e-37 Identity = 77/230 (33.48%), Postives = 133/230 (57.83%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WP G + ++++ +Y +L +SF+I P +VG++GRTG+GKS++L+ L R++ E G I IDG L RK G+IPQ +FSGT R NLDP+ + +D ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F CT+++ HR+ +++C + L+++ +V YD+ ++LLS Sbjct: 1206 WPLGGQMTIKNLIAKYTDNGNAILENISFSISPGQRVGLLGRTGSGKSTLLSALLRLLNTE-GEIQIDGVSWDSVTLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWNDEEIWKVADEVGLRSVIEQFPGKLDFVLLDGGFVLSHGHKQLLCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFADCTVILSEHRIEAMLECQQFLVIEENKVRQYDSLQKLLS 1434
BLAST of FC931267 vs. ExPASy Swiss-Prot
Match: CFTR_BOVIN (Cystic fibrosis transmembrane conductance regulator OS=Bos taurus GN=CFTR PE=2 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 5.755e-37 Identity = 78/230 (33.91%), Postives = 131/230 (56.96%), Query Frame = 3 Query: 48 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVL*YDTPEELLS 737 WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L R++ +G I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ + L+ I + LD + + G S G +Q KIL+LDE +A +D T +I++T+++ F +CT+++ HR+ +++C R L+++ +V YD+ + +LS Sbjct: 1205 WPSGGQMTVKDLTAKYTDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLLAFLRLLNT-KGEIQIDGVSWDSITLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQIIRRTLKQAFANCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQRMLS 1433 The following BLAST results are available for this feature:
BLAST of FC931267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931267 ID=FC931267; Name=FC931267; organism=Citrus clementina; type=EST; length=741bpback to top |