FC931272

Overview
NameFC931272
Unique NameFC931272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931272_ssr610 microsatellite FC931272_ssr610:610..621. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9193 contig Ccv1_Contig9193:169..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPK9_ORYSJ (CBL-interacting protein kinase 9 OS=Oryza sativa subsp. japonica GN=CIPK9 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25
Identity = 65/192 (33.85%), Postives = 107/192 (55.73%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKKS--------APKVVITKQEMEFEADKSS------KQPETLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTR-PASSVISRFEEVAKAVKFNVKTSESRVRLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVWMSTAD 532
            I ++LDPNP +RI I++I+E  WFKK            V +   +  F+  + +      ++PE++NAF +IS S+GF+L                  T++     ++S+ EE    + FNV+    +++L+G ++GRKG L++  ++F V PSL +VE++K  GDTLE++ F +N     LKDIVW S +D
Sbjct:  259 IKRILDPNPCTRITIAQILEDDWFKKDYKPPLFEQGEDVSLDDVDAAFDCSEENLVAEKREKPESMNAFALISRSQGFNLGNLFEKEMMGMVKRETSFTSQCTPQEIMSKIEEACGPLGFNVRKQNYKMKLKGDKTGRKGYLSVATEVFEVAPSLHMVELRKTGGDTLEFHNFYNN-FSSELKDIVWKSESD 449          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKW_ORYSJ (CBL-interacting protein kinase 32 OS=Oryza sativa subsp. japonica GN=CIPK32 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.645e-24
Identity = 63/188 (33.51%), Postives = 98/188 (52.13%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKKSAPK--------------VVITKQEMEFEADKSSKQPETLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVKTSESRVRLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVWMS 523
            +T++LDPNP +R+ I +I+E  WFKK   +                +     E    +  ++PE LNAF +IS+S G +L                  +  P   ++ + EE AK + F+V+    ++RL+  ++GRKG L +  +I  V PSL +VEV+K  GDTLE+++F  N L   LKD+VW S
Sbjct:  245 LTRILDPNPMTRVTIPEILEDEWFKKGYKRPEFDEKYDTTLDDVYAVFNDSEEHHVTEKKEEPEALNAFELISMSAGLNLG-NLFDSEQEFKRETRFTSKCPPKEIVRKIEEAAKPLGFDVQKKNYKLRLEKVKAGRKGNLNVATEILQVAPSLHMVEVRKAKGDTLEFHKFYKN-LSRTLKDVVWKS 430          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKS_ORYSJ (CBL-interacting protein kinase 28 OS=Oryza sativa subsp. japonica GN=CIPK28 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.217e-24
Identity = 71/192 (36.98%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   11 LLDPNPNSRIAISKIMESSWFKK----SAPKVVITKQEMEFEA-----------DKSSKQPE--TLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNV-KTSESRVRLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVWMSTAD 532
            +LDP+P++R++IS+I  S+W++K    SA      K+    EA           +++ + P    LNAF IISLS GFDLS                 + +PA++V+ + +E+AKA+   V KT    ++L   + GRKG+L ++A++  V P LLV E+KK NGDTLEY +    ++RP+LKDI+W    D
Sbjct:  245 ILDPDPSTRMSISRIKRSAWYRKPIAISALNNETGKKSCTSEAPFSGPTICISSERNQEPPNLHNLNAFDIISLSTGFDLS--GLFGERYGRRESLFTSRKPAAAVLVKLKELAKALNLKVTKTDNGVLKLATTKEGRKGRLELDAEVSEVAPFLLV-ELKKTNGDTLEYQRMMKEDIRPSLKDIIWTWQGD 433          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKD_ARATH (CBL-interacting serine/threonine-protein kinase 13 OS=Arabidopsis thaliana GN=CIPK13 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.120e-24
Identity = 71/203 (34.98%), Postives = 103/203 (50.74%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKKSAPKV------------------------------VITKQEMEFEADK--SSKQPETLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVKTSESRVRLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIV 514
            +T++LD NP++RI I +IM+  WFKK    V                                ++ + EF+  +  S  +P +LNAF I+S S   DLS                 +  P + +IS+ EE+AK VKF V+  +  VRL+G   G KG L I  +IF +TPSL+VVEVKK  G+  EY +FC+ ELRP L+ ++
Sbjct:  288 VTRMLDTNPDTRITIPEIMKHRWFKKGFKHVKFYIENDKLCREDDDNDDDDSSSLSSGRSSTASEGDAEFDIKRVDSMPRPASLNAFDILSFS---DLS----GLFEEGGQGARFVSAAPMTKIISKLEEIAKEVKFMVRKKDWSVRLEGCREGAKGPLTIRVEIFELTPSLVVVEVKKKGGNIEEYEEFCNKELRPQLEKLM 483          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKG_ARATH (CBL-interacting serine/threonine-protein kinase 16 OS=Arabidopsis thaliana GN=CIPK16 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 69/196 (35.20%), Postives = 103/196 (52.55%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKK---------------SAPKVVITKQEMEF-EADKSSKQPETLNAFHII-SLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVK-TSESRVRLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVWMSTADN 535
            +++LL P+P  RI++S+I    WF+K               S P+    K++ +  E +     P + NAF  I S+S GFDLS                 +  PA SV  R E  A+ +   VK   + +++LQ +  GRKG+L++ A++F V P + VVE  K +GDTLEY  FC +++RPALKDIVW    D+
Sbjct:  255 LSRLLVPDPEQRISMSEIKMIPWFRKNFTPSVAFSIDETIPSPPEPPTKKKKKDLNEKEDDGASPRSFNAFQFITSMSSGFDLS---NLFEIKRKPKRMFTSKFPAKSVKERLETAAREMDMRVKHVKDCKMKLQRRTEGRKGRLSVTAEVFEVAPEVSVVEFCKTSGDTLEYYLFCEDDVRPALKDIVWSWQGDD 447          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKQ_ARATH (CBL-interacting serine/threonine-protein kinase 26 OS=Arabidopsis thaliana GN=CIPK26 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23
Identity = 61/189 (32.28%), Postives = 102/189 (53.97%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKKS-APKVVITKQEMEFE--------------ADKSSKQPETLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVKTSESRVRLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVWMS 523
            I ++LDPNP +RI I +++  +WFKK+  P V   K+E   +               +K  +QP ++NAF +IS+S   DL                      A+ ++ + EE +K + F+++    ++RL+   +GRKG L +  +IF V+PSL ++EV+K  GDTLE+++F   +L  +L D+VW S
Sbjct:  245 IVRILDPNPMTRITIPEVLGDAWFKKNYKPAVFEEKEEANLDDVDAVFKDSEEHHVTEKKEEQPTSMNAFELISMSRALDLG-NLFEEEEGFKRETRFAAKGAANDLVQKIEEASKPLGFDIQKKNYKMRLENVTAGRKGNLRVATEIFQVSPSLHMIEVRKTKGDTLEFHKF-YKKLSTSLNDVVWKS 431          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKR_ORYSJ (Putative CBL-interacting protein kinase 27 OS=Oryza sativa subsp. japonica GN=CIPK27 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 73/186 (39.25%), Postives = 94/186 (50.54%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKKSAP---KVVITKQEMEFEA-----DKSSKQPETLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVKTSESRV--RLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVWMSTA 529
            I  LLDPNP +RI ++ ++E+ WF+K+AP    ++        +      D   + PE LNAFH+ISLSEGFDLSP                   PA+S   R    A   +F  + + S V  RL+    G             V PSLL+V+VKKD GD +EY  F S ELRPALKDIVW   A
Sbjct:  243 IKSLLDPNPGTRITVAGLLETPWFRKTAPVPRPIIADPAAAPVDTRGNAGDDKDEPPEVLNAFHLISLSEGFDLSPLFEHD--------------PAASP-GRATARAGGTRFATREAASGVVARLEALAMGGA----------RVAPSLLMVDVKKDGGDAMEYRPFFSEELRPALKDIVWSPAA 403          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKQ_ORYSJ (CBL-interacting protein kinase 26 OS=Oryza sativa subsp. japonica GN=CIPK26 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    8 KLLDPNPNSRIAISKIMESSWFKKSAPKVVI-------------------TKQEMEFEADKSSKQ--------------PE--------------TLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVKTSESRV-RLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVW 517
            K+LDP+P++RI+I KI  S+W++KS+    +                   T +   FE +++S +              PE               LNAF IISLS GFDLS                 T +PA+++ ++  E+A+  K  +K  E+ V RL   + G KG L ++A++F + PS  +VE KK NGDT+EY +    ++RPALKDIVW
Sbjct:  245 KILDPDPSTRISIPKIKRSAWYRKSSDVNALKSKHETGDKVYKGEATTSDTTECSIFEGNRASSRDKVYTNGEATTSDSPECSNSDGKQASLSLPNLNAFDIISLSTGFDLS--NLFEERYGRREERFTTRQPAAAIFAKLNELARRFKLKIKKKENGVLRLVAPKEGIKGLLELDAEVFELAPSFHLVEFKKSNGDTIEYQKLMKEDIRPALKDIVW 460          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPKJ_ARATH (CBL-interacting serine/threonine-protein kinase 19 OS=Arabidopsis thaliana GN=CIPK19 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.978e-23
Identity = 69/206 (33.50%), Postives = 103/206 (50.00%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKKSAPKV------------VITKQEME-----------------FEA------DKSSKQPETLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVKTSESRVRLQGQESGR-KGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDI 511
            + ++L+  P  R  +  IME+SWFKK    +            V    E+E                 FE+        S  +P +LNAF +IS S GFDLS                 +  P   +IS+ EE+A+ V F V+  + +V L+G   G  KG L+I A+IF +TP+L+VVEVKK  GD +EY++FC+ EL+P L+++
Sbjct:  259 LIRMLETKPERRFTMPDIMETSWFKKGFKHIKFYVEDDHQLCNVADDDEIESIESVSGRSSTVSEPEDFESFDGRRRGGSMPRPASLNAFDLISFSPGFDLS----GLFEDDGEGSRFVSGAPVGQIISKLEEIARIVSFTVRKKDCKVSLEGSREGSMKGPLSIAAEIFELTPALVVVEVKKKGGDKMEYDEFCNKELKPKLQNL 460          
BLAST of FC931272 vs. ExPASy Swiss-Prot
Match: CIPK3_ORYSJ (CBL-interacting protein kinase 3 OS=Oryza sativa subsp. japonica GN=CIPK3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.978e-23
Identity = 63/187 (33.69%), Postives = 95/187 (50.80%), Query Frame = 2
Query:    2 ITKLLDPNPNSRIAISKIMESSWFKKSAPKVVITKQ---------------EMEFEADKSSKQPETLNAFHIISLSEGFDLSPXXXXXXXXXXXXXXXXTTRPASSVISRFEEVAKAVKFNVKTSESRVRLQGQESGRKGKLAINADIFAVTPSLLVVEVKKDNGDTLEYNQFCSNELRPALKDIVW 517
            I ++LDPNP +RI  S++++  WFKK     V   +               E +   +   +QP  +NAF +ISL++G +L                  +  P   +I+R EE A  + FN++    R+R++  + GRKG L I  ++F V PSL VVE+KK  GDTLE+ +F    L   LKD+VW
Sbjct:  251 IARILDPNPATRITTSQVLQDQWFKKGYESPVFDDKYYPYFHDVYDAFGDSEEKHVKEAMEEQPTLMNAFELISLNKGLNLD-NFFESDKKYKRETRFTSQCPPKEIINRIEEAANLLGFNIQKRNYRMRMENIKEGRKGHLNIATEVFQVAPSLHVVELKKAKGDTLEFQKFYQT-LSTQLKDVVW 435          
The following BLAST results are available for this feature:
BLAST of FC931272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CIPK9_ORYSJ7.344e-2533.85CBL-interacting protein kinase 9 OS=Oryza sativa s... [more]
CIPKW_ORYSJ3.645e-2433.51CBL-interacting protein kinase 32 OS=Oryza sativa ... [more]
CIPKS_ORYSJ6.217e-2436.98CBL-interacting protein kinase 28 OS=Oryza sativa ... [more]
CIPKD_ARATH8.120e-2434.98CBL-interacting serine/threonine-protein kinase 13... [more]
CIPKG_ARATH1.385e-2335.20CBL-interacting serine/threonine-protein kinase 16... [more]
CIPKQ_ARATH3.086e-2332.28CBL-interacting serine/threonine-protein kinase 26... [more]
CIPKR_ORYSJ5.263e-2339.25Putative CBL-interacting protein kinase 27 OS=Oryz... [more]
CIPKQ_ORYSJ5.263e-2333.03CBL-interacting protein kinase 26 OS=Oryza sativa ... [more]
CIPKJ_ARATH8.978e-2333.50CBL-interacting serine/threonine-protein kinase 19... [more]
CIPK3_ORYSJ8.978e-2333.69CBL-interacting protein kinase 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34103D03EF PostHarvP1 Citrus clementina cDNA clone C34103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931272 ID=FC931272; Name=FC931272; organism=Citrus clementina; type=EST; length=677bp
GATCACCAAGCTTCTCGATCCAAACCCTAACTCAAGAATCGCTATTTCAA
AGATCATGGAGTCTTCTTGGTTCAAAAAGTCTGCTCCCAAGGTTGTGATA
ACTAAGCAAGAGATGGAATTTGAAGCTGACAAGTCATCGAAGCAACCTGA
GACTCTAAATGCGTTTCATATCATCTCTTTGTCGGAAGGGTTTGATTTGT
CACCTTTGTTTGAGGAGAAAAAGAGAGCGGAAAGAGAGGAGCTGAGATTT
GCAACCACGAGGCCTGCAAGCAGTGTGATCTCAAGATTTGAAGAGGTGGC
CAAGGCCGTTAAGTTTAATGTCAAAACGAGCGAGTCAAGAGTCAGATTAC
AAGGCCAAGAAAGCGGAAGGAAAGGCAAATTGGCTATCAATGCTGACATC
TTTGCCGTTACACCGTCGCTTTTGGTGGTGGAAGTGAAGAAAGATAATGG
TGATACATTGGAGTACAATCAATTCTGTAGCAACGAGCTTCGGCCGGCGC
TTAAGGACATTGTCTGGATGTCAACTGCTGACAATCCCACGCTTGGCTTG
AACCTGGAGGAGCAACAAATTTAAAATTGATTGCTGATGAATTGTGGGTA
TATCTCAGATGATTGATTGATTGTTGTTGATTATGGGATTTAGAGTTTGA
TTAATTTGATGGTGATCATGGAATATC
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