FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_BORBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.581e-58
Identity = 124/222 (55.86%), Postives = 152/222 (68.47%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFAAGLA EG KP  AIYS+FLQRGYDQ+VHDV LQ L V FA+DRAGLVGADG TH G +DI F+ C+PNMVV APSDE+E   +++T       P+  R+PRG G GA +       PL  GKG +  EG R+AILG+G++VQ  + AA       I  TVAD RF KPLD +L+ +LA  H+ L+TVEE ++ GG GS V   L  +G+
Sbjct:  361 DVGIAEQHAVTFAAGLACEGQKPVVAIYSTFLQRGYDQLVHDVALQNLDVTFALDRAGLVGADGATHAGNYDIAFLRCVPNMVVAAPSDESEARLLLST-CYEHPGPASVRYPRGAGCGAAVGEGLATVPL--GKGLVRREGRRIAILGFGTLVQAALGAAG-----QIDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_RALEJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=dxs PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 124/227 (54.63%), Postives = 153/227 (67.40%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRI-----LMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFA G+A EG+KP  AIYS+FLQRGYDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+DI ++ C+PNM+VM PSDE E   ++ T A   + P+  R+PRG G G       K  P  +GKG +        G RVA LG+GS+V   + AA     Q +  +VAD RF KPLD +L+++LA EH  L+TVEEGSV GG GS V   L  +GI
Sbjct:  365 DVGIAEQHAVTFAGGMACEGLKPIVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGAYDIAYLRCIPNMMVMTPSDENECRQLL-TTAFHQNCPTAVRYPRGAGQGVATEAVLKDVP--VGKGVMRRTGGARSGQRVAFLGFGSMVHPALGAA-----QALDASVADMRFVKPLDVELVKRLAEEHNYLVTVEEGSVMGGAGSAVLEALAEAGI 583          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PROMH (1-deoxy-D-xylulose-5-phosphate synthase OS=Proteus mirabilis (strain HI4320) GN=dxs PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 117/217 (53.92%), Postives = 152/217 (70.05%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DR G+VGADG TH GAFD++F+ C+PNM++MAPSDE E   M+ T     + P   R+PRG+G+GA L P ++   L IGKG I  +G  +AIL +G+++ + +  A     + +  TVAD RF KPLD +LI  LA +H+IL+T+EE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRGGIVGADGQTHQGAFDLSFLRCIPNMIIMAPSDENECRQMLHTGYHYQEGPVAVRYPRGSGVGAPLQPLSE---LPIGKGIIRRQGKSIAILNFGTLLPEALDVA-----EKLDATVADMRFIKPLDKELILSLAKQHDILVTLEENAIMGGAGSGVNELL 573          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 117/213 (54.93%), Postives = 149/213 (69.95%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DVGIAEQHAVT AAG+A +G++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI+++  +PN  VMAP DEAEL  M+ T  + +D P   R PRG+G G  L       PL+IG+G IL +GD + IL YGS+V   V  A +LK   IS TV +ARF +PLD  LI  LA     ++T+EEG++ GGFGS V
Sbjct:  365 DVGIAEQHAVTLAAGMACDGLRPVVAIYSTFLQRAYDQLIHDVGIQKLPVTFVLDRAGIVGADGPTHQGQYDISYLRSVPNFTVMAPKDEAELQRMLVT-CLENDGPCALRIPRGSGEGVTLMEEG-WEPLKIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGSAV 575          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PHOPR (1-deoxy-D-xylulose-5-phosphate synthase OS=Photobacterium profundum GN=dxs PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 118/223 (52.91%), Postives = 157/223 (70.40%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DV IAEQHAVT A+G+A  G  P  AIYS+FLQRGYDQ++HDV + +LPV FA+DR GLVGADG TH GAFD++FM C+PN+V+MAPSDE E   M+ T       PS  R+PRGNG+GA +    + T LEIGKG I  +G+++AIL +G++++  + AA     + ++ TVAD RF KPLD +LI +LA  H++L+TVEE ++ GG GS V  F+  S  L
Sbjct:  365 DVAIAEQHAVTLASGMAIGGYNPIVAIYSTFLQRGYDQLIHDVAIMELPVMFAIDRGGLVGADGQTHQGAFDLSFMRCIPNIVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGLGAEI--QKEMTALEIGKGIIRRQGEKIAILNFGTMLEYALEAA-----EKLNATVADMRFVKPLDEELILELAANHDVLVTVEENAIAGGAGSGVIEFMMKSKCL 579          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_METFK (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 116/222 (52.25%), Postives = 157/222 (70.72%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHA+TFAAG+A +G+KP  AIYS+FLQR YDQ +HD+ LQ LPV FA+DRAGLVGADGPTH G+FD++++ C+PN+++MAPSDE E   M+ T A + D PS  R+PRG G GA +  + +  P  IGKG +  +G  VAIL +GS++   + AA     + +  TVA+ RF KPLD +LI QLA+ H +++TVEE +V GG G+ V   +  + I
Sbjct:  358 DVGIAEQHALTFAAGMACDGLKPVVAIYSTFLQRAYDQFIHDIALQNLPVMFAIDRAGLVGADGPTHAGSFDLSYLRCIPNIIIMAPSDENECRQMLYT-AYLHDGPSAVRYPRGGGPGATITRDMQLLP--IGKGELRRQGSWVAILAFGSMLAPALEAA-----ETLDATVANMRFVKPLDANLINQLASSHTLIVTVEENAVMGGAGAAVMECMQAADI 571          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ENTS8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dxs PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 117/213 (54.93%), Postives = 148/213 (69.48%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P+MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G++VA+L +G+++ +   AA  L     + T+ D RF KPLD  LI +LA  HE L+T+EE +V GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPDMVIMTPSDENECRQMLFTGYHYNDGPSAVRYPRGNALGVTLEPLQK---LPIGKGVVKRHGEKVALLNFGTLLPEATQAAEAL-----NATLVDMRFVKPLDEALIMELAGRHEALVTIEENAVMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.596e-58
Identity = 122/224 (54.46%), Postives = 151/224 (67.41%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILD 669
            DVGIAEQHA+TFAAGLA++G +P  AIYS+FLQR YDQV HDV LQKLPV  A+DR GLVG DGPTH G FD++++  LP M +MAP DE EL HM+ T A+   RP   R+PRG G G  LP +     LEIG+G +L EGD VAI+  GS V     AA +L+++ I  TV +ARF KPLD +LI   A     ++TVEE ++ GGFGS V   L   G+ D
Sbjct:  363 DVGIAEQHALTFAAGLAADGFRPVTAIYSTFLQRAYDQVFHDVCLQKLPVTMALDRGGLVGDDGPTHHGTFDLSYLRHLPEMTLMAPKDENELQHMLKT-AIYAGRPVALRYPRGAGYG--LPLDQTIQSLEIGRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMTD 583          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SHESH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=dxs PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.123e-57
Identity = 116/217 (53.46%), Postives = 150/217 (69.12%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            D  IAEQHAVT  AG A EG+KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T     + P+  R+PRG+  G   P   +   L IGKG I  +G +VAIL +G+++   + AA     + I  TVAD RF KPLD +L+++LA+ H++L+TVEE ++ GG GS V   L
Sbjct:  365 DAAIAEQHAVTLGAGFACEGLKPVVAIYSTFLQRGYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYREGPTAVRYPRGSATGE--PQVEEMQALPIGKGLIKRQGQKVAILNFGTLLADVLTAA-----ESIDATVADMRFVKPLDVELVKELASSHDLLVTVEENAIMGGAGSGVLELL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_VIBSL (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio splendidus (strain LGP32) GN=dxs PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.466e-57
Identity = 122/229 (53.28%), Postives = 156/229 (68.12%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME------GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DV IAEQHAVT A G+A  G KP  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAGLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G  +   ++ T LEIGKGRI+ E      G +VAIL +G+ ++  +  A+      I  TVAD RF KPLD  LI+QLA +H++L+T+EE ++ GG G+ V  FL    +L
Sbjct:  365 DVAIAEQHAVTLATGMAIAGDKPIVAIYSTFLQRGYDQLIHDVAIMDLPVMFAIDRAGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHQ-HTGPSAVRYPRGNGMGTEI--QSEFTALEIGKGRIVRESKKAKDGSKVAILSFGTFLESALQTADA-----IDATVADMRFVKPLDEALIKQLAADHDVLVTIEENAIAGGAGAGVIEFLMQEKLL 585          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BORBR6.581e-5855.861-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_RALEJ8.596e-5854.631-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PROMH8.596e-5853.921-deoxy-D-xylulose-5-phosphate synthase OS=Proteus... [more]
DXS_PROM48.596e-5854.931-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PHOPR8.596e-5852.911-deoxy-D-xylulose-5-phosphate synthase OS=Photoba... [more]
DXS_METFK8.596e-5852.251-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]
DXS_ENTS88.596e-5854.931-deoxy-D-xylulose-5-phosphate synthase OS=Enterob... [more]
DXS2_GEOMG8.596e-5854.461-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_SHESH1.123e-5753.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_VIBSL1.466e-5753.281-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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