FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SHEPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dxs PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.466e-57
Identity = 114/217 (52.53%), Postives = 151/217 (69.59%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            D  IAEQHAVT  AG A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA        T + IGKG I  +G ++AIL +G+     +LA+++  ++ +  TVAD RF KPLD +L++QLA  H++L+TVEE ++ GG GS +   L
Sbjct:  365 DAAIAEQHAVTLGAGFACEGYKPVVAIYSTFLQRGYDQMIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRIVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--KQVETMTAMPIGKGLIKRQGKKIAILNFGT-----LLASSLTAAEALDATVADMRFVKPLDVELVKQLAESHDMLVTVEENAIMGGAGSGILELL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SHESA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain ANA-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.915e-57
Identity = 116/217 (53.46%), Postives = 146/217 (67.28%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            D  IAEQHAVT  AG A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG+  GA        T L IGKG I   G  +A+L +G+      LAA +  ++ +  TV D RF KPLD DL++++A  H++L+TVEE ++ GG GS V   L
Sbjct:  365 DAAIAEQHAVTLGAGFACEGFKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGSATGAT--QVEAMTALPIGKGVIKRLGKGIAMLNFGT-----TLAAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGVLELL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SHEB5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxs PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.915e-57
Identity = 116/213 (54.46%), Postives = 146/213 (68.54%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            D  IAEQHAVT +AG A EG KP  AIYS+FLQR YDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM C+PNMV+MAPSDE E   M+ T    D  PS  R+PRG   GA        T L IGKG I   G R+AIL +G+     +LA+ +  ++ +  TV D RF KPLD DL++++A  HE+L+TVEE ++ GG G+ V
Sbjct:  365 DAAIAEQHAVTLSAGFACEGFKPVVAIYSTFLQRAYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGCATGAT--QVEAMTALPIGKGVIKRVGKRIAILNFGT-----LLASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGAGV 570          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PSEA6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dxs PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.915e-57
Identity = 117/217 (53.92%), Postives = 151/217 (69.59%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA EG     AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADGPTH GAFDI F+ C+PNMV+M P+DE E   M+ T   + ++P+  R+PRG+G G  + P+N    LEIGK R + +G++VAIL +G ++     AA +L     + TV D RF KPLDT+ +  +A  HE+LIT+E+G + GG G  V  +L
Sbjct:  365 DVAIAEQHAVTFAAGLAKEGQNAVVAIYSTFLQRAYDQLIHDVALQNLPVLFAIDRAGLVGADGPTHQGAFDIPFLRCIPNMVIMTPADENECRQMLYTGHKL-NKPAAVRYPRGSGTG--VKPDNTMQALEIGKSRTIRQGEKVAILNFGVLLPYAEKAAEVL-----NATVIDMRFVKPLDTEAVANVAKNHELLITLEDGATTGGAGGAVAEYL 573          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ACISJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovorax sp. (strain JS42) GN=dxs PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.915e-57
Identity = 117/222 (52.70%), Postives = 151/222 (68.02%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFAAG+A EGVKP  AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+DI F+ C+P+M +  P+DE E   ++ T A   D P   R+PRG G+G    P+ +G P   GKG +   G R+AIL +G+++   + AA     Q +  TV + R+ KPLDT L+ Q+A EH+ L+TVEEG + GG GS V   L  +G+
Sbjct:  363 DVGIAEQHAVTFAAGMACEGVKPVVAIYSTFLQRAYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGAYDIAFVRCIPHMSMACPADERECRQLL-TTAYEQDHPVAVRYPRGAGVGVAPLPDLEGLP--FGKGEVRRTGQRIAILAFGTLLYPALQAA-----QALDATVVNMRWAKPLDTQLLLQVAAEHDALVTVEEGCIMGGAGSAVAEALAAAGL 576          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_YERPY (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 118/217 (54.38%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELL 572          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_YERPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis (strain Pestoides F) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 118/217 (54.38%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELL 572          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_YERPN (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 118/217 (54.38%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELL 572          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_YERPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 118/217 (54.38%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELL 572          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_YERPE (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 118/217 (54.38%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELL 572          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_SHEPA1.466e-5752.531-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHESA1.915e-5753.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB51.915e-5754.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PSEA61.915e-5753.921-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoa... [more]
DXS_ACISJ1.915e-5752.701-deoxy-D-xylulose-5-phosphate synthase OS=Acidovo... [more]
DXS_YERPY2.501e-5754.381-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPP2.501e-5754.381-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPN2.501e-5754.381-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPG2.501e-5754.381-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERPE2.501e-5754.381-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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