FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_YERPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 118/217 (54.38%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELL 572          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_YERP3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 118/217 (54.38%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DR GLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T     + P+  R+PRGNG  AVL P      L IGKG +  EG+++AIL +G+++ Q  LAA     ++++ T+ D RF KPLD +L+ ++A +H++L+TVEE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQNLPVLFAIDRGGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYT-GYHHNGPAAVRYPRGNGTSAVLEPLEM---LPIGKGVLRREGEKIAILCFGTLLAQAQLAA-----ENLNATLVDMRFVKPLDEELVLEMAAKHQVLVTVEENAIMGGAGSGVNELL 572          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SHELP (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 116/217 (53.46%), Postives = 146/217 (67.28%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            D  IAEQHAVT AAG A EG KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VG DGPTH GAFD+++M  +PNMV+MAPSDE E   M+ T    ++ P+  R+PRG+  G   P     T  EIGKG I  EG ++AIL +G+ +     AA  L       T+AD RF KPLD +L++QLA  H++L+TVEE ++ GG GS V   L
Sbjct:  365 DAAIAEQHAVTLAAGFACEGYKPVLAIYSTFLQRGYDQLIHDVALQKLPVIFAIDRGGIVGPDGPTHQGAFDLSYMRAIPNMVIMAPSDENECRQMLYTGYCYNEGPTAIRYPRGSATGE--PQVETMTAYEIGKGLIKREGKKIAILNFGTTLASASQAAEAL-----DATLADMRFVKPLDVELVKQLATSHDLLVTVEENAIMGGAGSGVLELL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ENT38 (1-deoxy-D-xylulose-5-phosphate synthase OS=Enterobacter sp. (strain 638) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 115/213 (53.99%), Postives = 149/213 (69.95%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++F+ C+P+MVVM PSDE E   M+ T     D PS  R+PRGN +G  L P  K   + IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A+ HE+LIT+EE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVIHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSFLRCVPDMVVMTPSDENECRQMLFTGYHYQDGPSAVRYPRGNAVGVELEPLTK---MPIGKGIVKRHGEKLAILNFGTLMPEAAKVA-----ESMNATLVDMRFVKPLDETLILEMASRHEVLITLEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_EDWI9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 119/217 (54.84%), Postives = 147/217 (67.74%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTF AGLA  G  P  AIYSSFLQR YDQV+HDV +Q+LPV FA+DR G+VGADG TH GAFD++F+ C+PN+V+M PSDE E   M+ T     + PS  R+PRG G GA L P      L IGKG +   G+R+AIL +GS++ Q + AA  L     + +VAD RF KPLD  L+R LA +HE L+T+EE +V GG GS V   L
Sbjct:  365 DVAIAEQHAVTFGAGLAIGGYHPVVAIYSSFLQRAYDQVIHDVAIQRLPVLFAIDRGGIVGADGQTHQGAFDLSFLRCIPNLVIMTPSDENECRQMLQTGYEYREGPSAVRYPRGTGTGAPLTPPQ---ALPIGKGVLRRRGERIAILNFGSLLPQALEAAERL-----NASVADMRFVKPLDDALVRSLAEQHEYLVTLEENAVMGGAGSGVNELL 573          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CHLTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlorobium tepidum GN=dxs PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 113/217 (52.07%), Postives = 155/217 (71.43%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFL 648
            DVGIAEQHAVTFAAGLA  G KP  A+YS+FLQR YDQ++HDV LQ L V FA+DRAGLVG DGPTH GAFD+++++ +PN+ +MAP DE EL +M+ TA      P   R+PRG+G GA L  + + TP+ +G+GRIL +G  VA+LG G++  + +  A +L++  +   V D RF KPLDT++I   A+    ++T+EE S +GGFGS+V ++L
Sbjct:  371 DVGIAEQHAVTFAAGLACGGFKPVFAVYSTFLQRAYDQLIHDVALQNLHVVFAIDRAGLVGEDGPTHHGAFDLSYLNVVPNLTIMAPGDEQELRNMLYTALYDIKGPVAIRYPRGSGSGATL--HKEFTPVPVGRGRILRDGKSVALLGIGTMSNRALETAALLEAAGLDPLVCDMRFLKPLDTEIIDMAASRCTHIVTIEENSIIGGFGSNVVNYL 585          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 122/227 (53.74%), Postives = 154/227 (67.84%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFA GLA+EG+KP  AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+D+ F+ C+PNM VMA SDE E   M+ T A+    P+  R+PRG G G  +    + T L +GKG I  E     G R+AIL +G++V     A ++  ++ +  TVA+ RF KPLD DL+RQLA  H+ ++TVEEG V GG GS     L  SG+
Sbjct:  360 DVGIAEQHAVTFAGGLAAEGMKPVVAIYSTFLQRAYDQLIHDVALQNLPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLYT-ALQQPNPTAVRYPRGAGTG--VATIKQMTALPLGKGEIRRETSQPAGKRIAILAFGTMV-----APSLAAAEQLDATVANMRFVKPLDADLVRQLAETHDAIVTVEEGCVMGGAGSACVEALLASGV 578          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_BORA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella avium (strain 197N) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 120/222 (54.05%), Postives = 151/222 (68.02%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFAAGLA EG KP  AIYS+FLQRGYDQVVHDV LQ L V FA+DRAGLVGADG TH G +DI F+ C+PNMV+  PSDE E   +++T       P+  R+PRG G GA +       PL  GKG +   G R+AI+G+G++V   + AA     + +  TVAD RF KPLD +L+R+LA  HE L+T+E+ +V GG GS V   L ++G+
Sbjct:  361 DVGIAEQHAVTFAAGLACEGQKPVVAIYSTFLQRGYDQVVHDVALQNLDVTFALDRAGLVGADGATHAGNYDIAFLRCVPNMVIATPSDENETRLLLSTCYAYPG-PASVRYPRGAGCGAAVSAGLDTVPL--GKGVVRRRGARIAIMGFGTLVPAALAAA-----EKLDATVADMRFVKPLDVELLRELAATHEALVTLEDAAVMGGAGSAVTEALNMAGL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SERP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Serratia proteamaculans (strain 568) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.266e-57
Identity = 116/217 (53.46%), Postives = 149/217 (68.66%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQ++HDV +QKLPV FA+DR G+VGADG TH GAFD++FM C+P MV+M PSDE E   M+ T    ++ PS  R+PRGNG GA L P N    L IGKG +  EG+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI +LA  H+ L+T+EE ++ GG GS V   L
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPVVAIYSTFLQRAYDQLIHDVAIQKLPVMFAIDRGGIVGADGQTHQGAFDLSFMRCIPTMVIMTPSDENECRQMLYTGYHYNEGPSAVRYPRGNGTGAPLEPLNS---LPIGKGVVRREGEKLAILNFGTLLPEAAQVA-----ETLNATLVDMRFVKPLDEQLILELAASHDALVTLEENAIMGGAGSGVNELL 573          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.266e-57
Identity = 119/223 (53.36%), Postives = 156/223 (69.96%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DV IAEQHAVTFAAG+A EG KP  AIYS+FLQRGYDQ+VHDV +Q L V FA+DRAGLVG DGPTH G+FD++++ C+P M+VM PSDE EL  M++T  + +  P+  R+PRGNG  AV+  + +  P+EIGKG +  +G + A L +G  VQ   LA  +  ++ I  TV D RF KPLD  L+R++A  HE+L+TVEE ++ GG G+ V  FL    IL
Sbjct:  373 DVAIAEQHAVTFAAGMACEGAKPVVAIYSTFLQRGYDQLVHDVAVQNLDVLFAIDRAGLVGEDGPTHAGSFDLSYLRCIPGMLVMTPSDENELRKMLSTGHLYNG-PAAVRYPRGNGPNAVIEKDLE--PIEIGKGIVRRQGSKTAFLVFG--VQ---LAEALKVAEKIDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENIL 587          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_YERPA2.501e-5754.381-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_YERP32.501e-5754.381-deoxy-D-xylulose-5-phosphate synthase OS=Yersini... [more]
DXS_SHELP2.501e-5753.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_ENT382.501e-5753.991-deoxy-D-xylulose-5-phosphate synthase OS=Enterob... [more]
DXS_EDWI92.501e-5754.841-deoxy-D-xylulose-5-phosphate synthase OS=Edwards... [more]
DXS_CHLTE2.501e-5752.071-deoxy-D-xylulose-5-phosphate synthase OS=Chlorob... [more]
DXS_BURXL2.501e-5753.741-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BORA12.501e-5754.051-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_SERP53.266e-5753.461-deoxy-D-xylulose-5-phosphate synthase OS=Serrati... [more]
DXS_PSEFS3.266e-5753.361-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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