FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECOL6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O6 GN=dxs PE=3 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECOL5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKCRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECOK1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O1:K1 / APEC GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECODH (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain K12 / DH10B) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECOBW (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain K12 / BW2952) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECO81 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O81 (strain ED1a) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECO7I (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECO45 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ECO27 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHV 636
            DV IAEQHAVTFAAGLA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L P  K   L IGKG +   G+++AIL +G+++ +    A     + ++ T+ D RF KPLD  LI ++A  HE L+TVEE ++ GG GS V
Sbjct:  365 DVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEK---LPIGKGIVKRRGEKLAILNFGTLMPEAAKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_VIBCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 116/222 (52.25%), Postives = 154/222 (69.37%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRIL-----MEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVT A G+A  G  P  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAG+VGADG TH GAFD+++M C+PNM++MAP+DE E   M+ T       PS  R+PRGNG+G  L   +  T LEIGKGR++      EG++VAIL +G+++   + AA     + ++ TVAD RF KPLD  LI+QLA  H++L+T+EE ++ GG G+ V  FL
Sbjct:  365 DVAIAEQHAVTLATGMAIAGYHPIVAIYSTFLQRGYDQLIHDVAIMNLPVMFAIDRAGIVGADGQTHQGAFDLSYMRCIPNMLIMAPADENECRQMLYTGHQ-HQGPSAVRYPRGNGMGVEL--ESSFTALEIGKGRLMRESTACEGEKVAILSFGTLLPNALQAA-----EKLNATVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFL 578          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ECOL62.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOL52.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOK12.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECODH2.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECOBW2.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO812.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO7I2.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO452.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_ECO272.117e-5653.521-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_VIBCM2.765e-5652.251-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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