FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.363e-79
Identity = 142/223 (63.68%), Postives = 178/223 (79.82%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAG+A EG KPF AIYS+FLQR YDQ++HDV +QKLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE ELMHMV TAA  D  P  FR+PRG GIG  LP   +G  LEIGKGRIL EG+R+A++ +G+ + + ++AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+T+EEG++GGFG+H+  FL   G+L+
Sbjct:  366 DVGIAEQHAVTFAAGMACEGYKPFVAIYSTFLQRAYDQIIHDVSIQKLPVRFAIDRAGFVGADGATHAGSFDIVFLTTLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGIGMDLP--QRGEILEIGKGRILHEGNRIALVCFGTRISEVLVAADELSAEGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLE 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.780e-79
Identity = 148/223 (66.37%), Postives = 175/223 (78.48%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAGLA++G+KPF AIYS+FLQRGYDQVVHDV +Q LPVRFA+DRAGLVGADGPTH G+FD+ FM  LP MVVM P+DEAEL   +ATA  IDDRPS FR+PRG G+G  +P      PLEIG+GRI+ EG  VAIL +G+ + + + AA+ML ++ +S TVADARF KPLD DL+ +LA EHE LITVEEG+VGGFG  V H L   G LD
Sbjct:  364 DVGIAEQHAVTFAAGLAADGMKPFAAIYSTFLQRGYDQVVHDVAIQSLPVRFAIDRAGLVGADGPTHAGSFDVGFMGQLPGMVVMGPADEAELARAIATAVAIDDRPSAFRYPRGEGVGVEIPA--LADPLEIGRGRIVREGTAVAILSFGTRLGESLKAADMLAARGLSATVADARFAKPLDVDLLLRLAREHEALITVEEGAVGGFGGFVLHALAEHGALD 584          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.780e-79
Identity = 144/223 (64.57%), Postives = 176/223 (78.92%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAG+A EG KPF AIYS+FLQR YDQ++HDV +QKLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE ELMHMV TAAV D  P  FR+PRG GIG  LP   +G  LEIGKGR+L EG RVA++ +G+ + + ++AA+ L ++ IS TVADARF KPLD DL+R+LA EHE+ IT+EEG++GGFG+HV  FL    +L+
Sbjct:  366 DVGIAEQHAVTFAAGIACEGYKPFVAIYSTFLQRAYDQIIHDVSIQKLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPEFVVMAPSDEVELMHMVRTAAVYDQGPISFRYPRGEGIGMDLP--QRGEVLEIGKGRVLREGSRVALVCFGTQLSEVLVAADELAAEGISTTVADARFAKPLDKDLMRRLAREHEVFITIEEGAIGGFGAHVLQFLAQEALLE 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.325e-79
Identity = 143/223 (64.13%), Postives = 174/223 (78.03%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAGLA+EG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPN V+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P    G PL IGKGRI+ +G +VA+L  G+ + +C  AA+ L +  +S T+ADARF KPLD DL+ +LA +H++LIT+EEGS+GGFGSHV   L   G LD
Sbjct:  393 DVGIAEQHAVTFAAGLATEGFKPFCAIYSTFLQRGYDQIVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGVPLPIGKGRIVRQGSKVALLSLGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALD 613          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.036e-79
Identity = 149/223 (66.82%), Postives = 178/223 (79.82%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAGLA++G+KPF AIYS+FLQRGYDQVVHDV +QKLPVRFA+DRAGLVGADG TH G+FDI ++  LP MV+MA +DE EL  MV TAA+IDD PS FR+PRGNG G  +P  ++  PLEIGKGRI+ EG R+AIL  G+ +++ + AA+ L +Q  S TVADARF KPLD DLI +LA EHE+LITVEEG+VGGFG+ V H L   G LD
Sbjct:  364 DVGIAEQHAVTFAAGLAADGMKPFAAIYSTFLQRGYDQVVHDVAIQKLPVRFAIDRAGLVGADGATHAGSFDIGYLGALPGMVLMAAADELELSRMVKTAALIDDGPSAFRYPRGNGTGIEIP--DQIEPLEIGKGRIVREGSRIAILSLGTRLEESLKAADALAAQGFSTTVADARFAKPLDEDLILRLAREHEVLITVEEGAVGGFGAFVLHMLADKGALD 584          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.036e-79
Identity = 147/224 (65.62%), Postives = 176/224 (78.57%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDG 672
            DVGIAEQHAVTFAAGLA+EG +PFCA+YS+FLQRGYDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FD++++  LPNMV+MA +DEAEL+HMVATAA  D+ P  FR+PRG G+G  LP    G  L+IG+GRI+ EG  VA+L  G+ + +   AA  L S  ISVTVADARF KPLD DL+R+LA  HE+LIT+EEGSVGGFGS V   L   G+LDG
Sbjct:  367 DVGIAEQHAVTFAAGLATEGYRPFCALYSTFLQRGYDQVVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDVSYLGILPNMVIMAAADEAELVHMVATAAAYDEGPIAFRYPRGEGVGIELP--QIGEILDIGRGRIVREGTTVALLSLGTRLAEASKAAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDG 588          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.763e-79
Identity = 142/223 (63.68%), Postives = 177/223 (79.37%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAGLA EG KPF AIYS+FLQR YDQ++HDV +QKLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE ELMHMV TAA  D  P  FR+PRG GIG  LP   +G  LEIGKGR+L EG+R+A++ +G+ + + + AA+ L ++ +S TVADARF KPLD DL+R+LA EHE+L+T+EEG++GGFG+H+  FL   G+L+
Sbjct:  366 DVGIAEQHAVTFAAGLACEGYKPFVAIYSTFLQRAYDQIIHDVSIQKLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPEFVVMAPSDELELMHMVRTAAAYDQGPISFRYPRGEGIGIDLP--QRGEILEIGKGRVLREGNRIALVCFGTRMSEVLRAADRLGAKGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLE 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.833e-79
Identity = 142/224 (63.39%), Postives = 175/224 (78.12%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDG 672
            DVGIAEQHAVTFAAGLA  G+KPFCAIYSSFLQRGYDQ+ HDV LQ LPVRF +DRAGLVGADG TH GAFD+ F++ LPNM VMA +DEAEL+HM+ATA   D+ P  FRFPRG G+G  +P   +GT LE G+GR++ EG  VAIL +G+ + + + AA +L+++ +SVTVADARF +PLDT LI QL   H  L+TVE+G++GGFG+HV H+L  SG  DG
Sbjct:  369 DVGIAEQHAVTFAAGLAGAGMKPFCAIYSSFLQRGYDQIAHDVALQNLPVRFVIDRAGLVGADGATHAGAFDVGFITSLPNMTVMAAADEAELIHMIATAVAFDEGPIAFRFPRGEGVGVEMP--ERGTVLEPGRGRVVREGTDVAILSFGAHLHEALQAAKLLEAEGVSVTVADARFSRPLDTGLIDQLVRHHAALVTVEQGAMGGFGAHVMHYLANSGGFDG 590          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.154e-78
Identity = 145/223 (65.02%), Postives = 172/223 (77.13%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAGLA+EG KPF A+YS+FLQR YDQVVHDV +Q LPVRF +DRAG VGADGPTH G+FD  F++ LP  VVMA +DEAEL HMV TA   D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE++ITVEEGS+GGFGSHV HFL   G+LD
Sbjct:  366 DVGIAEQHAVTFAAGLAAEGYKPFAALYSTFLQRAYDQVVHDVAIQGLPVRFPIDRAGFVGADGPTHAGSFDTAFLTTLPGFVVMAAADEAELKHMVRTAVAYDGGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLD 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.507e-78
Identity = 144/224 (64.29%), Postives = 174/224 (77.68%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDG 672
            DVGIAEQHAVTFAAGLA+EG KPF A+YS+FLQR YDQVVHDV +Q LPVRF +DRAG VGADGPTH G+FD T+++ LP  VVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G  LP   +G  L IGKGRI+ +G++VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQLA  HE+LIT+EEG+VGGF SHV  FL   G++DG
Sbjct:  371 DVGIAEQHAVTFAAGLAAEGYKPFAALYSTFLQRAYDQVVHDVAIQGLPVRFPIDRAGFVGADGPTHAGSFDTTYLATLPGFVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVGVELP--ERGEILAIGKGRIVKQGNKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEVLITIEEGAVGGFASHVLQFLAEEGLIDG 592          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BARHE1.363e-7963.681-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_PHEZH1.780e-7966.371-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_BARBK1.780e-7964.571-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_NITHX2.325e-7964.131-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_MARMM3.036e-7966.821-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS_BEII93.036e-7965.631-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_BART16.763e-7963.681-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS1_RHOS48.833e-7963.391-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_RHIL31.154e-7865.021-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHIME1.507e-7864.291-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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