FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.372e-62
Identity = 124/223 (55.61%), Postives = 150/223 (67.26%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGIL 666
            DVGIAEQHAVT A GLA EG++P  AIYS+FLQR YDQV+HDV +Q LPV F MDRAG+VGADGPTH G +DI ++ C+PNM +MAP DEAEL  M+ T     D P   R+PRGNGIG  L       PL IGKG IL  GD + ILGYG++V   + AA  L+   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V    +   +L
Sbjct:  365 DVGIAEQHAVTLAGGLACEGMRPVVAIYSTFLQRAYDQVLHDVCIQNLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGIGVPLMEEG-WEPLPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.404e-62
Identity = 125/223 (56.05%), Postives = 156/223 (69.96%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DVGIAEQHAVTFAAGLA++G++P CAIYS+FLQR YDQV+HDV +QKLPV FAMDRAGLVG DG TH G FD+ ++ CLPNMV+MAP DE EL HM+ATA   ++ P   R+PRG+G+G  +P   +   L IG+  +L EG  VAI+  G+ V     AA++L  + I  TV +ARF KPLD  LI   A E   L+TVEE  + GGFGS V   L  +G+L
Sbjct:  355 DVGIAEQHAVTFAAGLATQGLRPVCAIYSTFLQRAYDQVIHDVCIQKLPVVFAMDRAGLVGEDGRTHHGVFDVAYLRCLPNMVLMAPKDEDELRHMLATALAYEEGPIALRYPRGSGVG--VPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAGLL 575          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.752e-62
Identity = 123/223 (55.16%), Postives = 152/223 (68.16%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGIL 666
            DVGIAEQHAVT AAG+A EG++P  AIYS+FLQRGYDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+PN+V+MAP DEAEL  M+ T           R+PRGNGIG  L       PLEIGK  IL  GD V +LGYGS+V   +  A +L    I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L  + +L
Sbjct:  365 DVGIAEQHAVTLAAGMACEGIRPVVAIYSTFLQRGYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCIPNLVLMAPKDEAELQQMLVTGVNYTGGAIAMRYPRGNGIGVPLMEEG-WEPLEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.513e-62
Identity = 123/223 (55.16%), Postives = 151/223 (67.71%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGIL 666
            DVGIAEQHAVT AAGLA EG++P  AIYS+FLQR YDQV+HDV +Q LPV F MDRAG+VGADGPTH G +DI ++ C+PN+V+MAP DEAEL  M+ T     D P   R+PRGNG+G  L        L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDTDLI  LA +   ++T+EEG  +GGFGS V   L    +L
Sbjct:  364 DVGIAEQHAVTLAAGLACEGMRPVVAIYSTFLQRAYDQVIHDVCIQNLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNLVIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGLGVPLMEEG-WEALPIGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHNVL 585          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.812e-62
Identity = 123/217 (56.68%), Postives = 150/217 (69.12%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DVGIAEQHAVT AAGLA EG++P  AIYS+FLQR YDQ++HDV +Q LPV F +DRAG+VG+DGPTH G +DI ++ C+PN+V+MAP DEAE+  MV T       P   RFPRGNG G  L       PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS V   L
Sbjct:  365 DVGIAEQHAVTLAAGLACEGMRPVAAIYSTFLQRAYDQIIHDVCIQNLPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEYTTGPIAMRFPRGNGYGVPLMEEG-WEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEAL 580          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.812e-62
Identity = 123/217 (56.68%), Postives = 151/217 (69.59%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DVGIAEQHAVT AAGLA+EG++P  AIYS+FLQR YDQ++HDV +Q LPV F +DRAG+VG+DGPTH G +DI ++ C+PN+V+MAP DEAE+  MV T       P   RFPRGNG G  L       PLEIGKG IL  GD V I+GYG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   ++T+EEG V GGFGS V   L
Sbjct:  365 DVGIAEQHAVTLAAGLATEGMRPVAAIYSTFLQRAYDQIIHDVCIQNLPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIVMMAPKDEAEMQRMVVTGIEHTTGPIAMRFPRGNGYGVPLMEEG-WEPLEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEAL 580          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_DECAR (1-deoxy-D-xylulose-5-phosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=dxs PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.281e-61
Identity = 125/222 (56.31%), Postives = 158/222 (71.17%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFAAGLA EG+KP  AIYS+FLQRGYDQ+VHDV LQ LPV FA+DR GLVGADGPTH G FD++F++C+PNM VMAP+DEAE   M++TA  ID  PS  R+PRG+G G +  P  K   L +GKG I   G  +A+L +GS+V     AA +   +++  TVA+ RF KPLD DLI +LA  H +L+++EE +V GG GS +   L   G+
Sbjct:  361 DVGIAEQHAVTFAAGLACEGLKPVVAIYSTFLQRGYDQLVHDVALQNLPVIFAVDRGGLVGADGPTHHGTFDLSFVTCIPNMTVMAPADEAECRKMLSTAMTIDG-PSMVRYPRGSGTGTI--PEAKLDTLPVGKGDIRRRGKDIALLAFGSLV-----AAAVAAGEELDATVANMRFIKPLDADLIVELAGNHSLLVSIEENAVIGGAGSEIERVLAERGL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.674e-61
Identity = 120/213 (56.34%), Postives = 148/213 (69.48%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHV 636
            DVGIAEQHAVT AAG+A EG++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+P MV+MAP DEAEL  MV T       P   R+PRG G+G  L       P+ IGK  +L  G  V IL YGS+V   + AA +LK   IS TV +ARF KPLDT+LI  LA +  +++TVEEG  +GGFGS V
Sbjct:  370 DVGIAEQHAVTLAAGMACEGMRPVVAIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGVVGADGPTHQGMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTKGPIAMRYPRGAGVGVPLAEEG-WEPIPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAV 581          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.674e-61
Identity = 125/223 (56.05%), Postives = 152/223 (68.16%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGIL 666
            DVGIAEQHAVT AAGLA EG++P   IYS+FLQR YDQ+VHDV +Q LPV F MDRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRGNG G  L       PL IGK  +L +GD + +L YGS+V   + AA +L+   I+ TV +ARF KPLDT+LI  LA +   ++TVEEG  +GGFGS V   L    IL
Sbjct:  363 DVGIAEQHAVTMAAGLACEGMRPVVTIYSTFLQRAYDQIVHDVCIQSLPVLFCMDRAGIVGADGPTHQGMYDIAYLRCLPNMVLMAPKDEAELQQMLVTGINYMDGPIGLRYPRGNGYGVALMEEG-WEPLPIGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL 584          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.728e-61
Identity = 127/222 (57.21%), Postives = 157/222 (70.72%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFAAG+A +G+KP  AIYS+FLQR YDQ++HDV LQ LPV FA+DRAGLVGADGPTH GAFD++++ C+PNMVVMAPSDE E   ++ T A + D P+  R+PRG G G    P    T L +G+G +  +G  +AIL +GS+V   + AA+ L       +VAD RF KPLDT LIRQLA  HE+L+TVEE  V GG GS V   L  +GI
Sbjct:  361 DVGIAEQHAVTFAAGMACDGLKPVVAIYSTFLQRAYDQLIHDVALQNLPVVFAIDRAGLVGADGPTHAGAFDLSYLRCIPNMVVMAPSDENECRQLLYT-AFLHDGPTAVRYPRGTGPGC--EPVAAMTALPLGQGTLRRQGKGIAILAFGSMVHPALAAADQL-----DASVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI 574          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CYAP83.372e-6255.611-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_THERP4.404e-6256.051-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_SYNY35.752e-6255.161-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_CYAP77.513e-6255.161-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_ANAVT9.812e-6256.681-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP9.812e-6256.681-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_DECAR1.281e-6156.311-deoxy-D-xylulose-5-phosphate synthase OS=Dechlor... [more]
DXS_SYNJA1.674e-6156.341-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_CYAP41.674e-6156.051-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_LARHH3.728e-6157.211-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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