FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.360e-61
Identity = 123/223 (55.16%), Postives = 150/223 (67.26%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGIL 666
            DVGIAEQHAVT AAGLASEG++P   IYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+PNMVVMAP DE EL  MV T     D     R+PRGNG G  L        + IGKG IL  GD V ILGYGS+V   +  A +L    ++ TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L  + +L
Sbjct:  365 DVGIAEQHAVTLAAGLASEGMRPVVCIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCIPNMVVMAPKDEGELQRMVLTGIKHTDGAIAMRYPRGNGYGVPLMEEG-WEAITIGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNNVL 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.360e-61
Identity = 120/217 (55.30%), Postives = 150/217 (69.12%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFL 648
            DVGIAEQHAVT +AGLA EG++P  AIYS+FLQR YDQV+HDV +Q LPV F +DRAG+VGADGPTH G +DI ++ C+PN+ +MAP DEAEL  MV T     D P   R+PRG+G+G  L       P+ IGKG IL  GD V ++GYG++V Q +  A +LK   I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L
Sbjct:  365 DVGIAEQHAVTLSAGLACEGMRPVVAIYSTFLQRAYDQVLHDVCIQNLPVFFCLDRAGIVGADGPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEG-WEPVSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEAL 580          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.417e-60
Identity = 123/223 (55.16%), Postives = 157/223 (70.40%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DV IAEQHAVT A G+A  G  P  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAGLVGADG TH GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L     + TVAD RF KPLD  LIRQLANEH++LIT+EE ++ GG G+ V  F+    I+
Sbjct:  365 DVAIAEQHAVTLATGMAIGGYNPIVAIYSTFLQRGYDQLIHDVAIMNLPVMFAIDRAGLVGADGQTHQGAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEAL-----NATVADMRFVKPLDEALIRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIM 579          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.850e-60
Identity = 120/217 (55.30%), Postives = 151/217 (69.59%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFL 648
            DVGIAEQHAVT AAGLA EG++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++  +PN+V+MAP DEAEL  M+ T     D     R+PRG+GIGA L  +    PL IGKG IL  GD + ++GYG++V   +  A +L    IS TV +ARF KPLD++LI  LA +   + T EEG  +GGFGS VC  L
Sbjct:  365 DVGIAEQHAVTLAAGLACEGMRPVVAIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGIVGADGPTHQGMYDIAYLRLIPNIVLMAPKDEAELQRMLVTGIEYTDGAIAMRYPRGSGIGAPLMEDG-WEPLPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEAL 580          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.417e-60
Identity = 122/223 (54.71%), Postives = 157/223 (70.40%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DV IAEQHAVT A G+A  G  P  AIYS+FLQRGYDQ++HDV +  LPV FA+DRAGLVGADG TH GAFD+++M C+PNMV+MAPSDE E   M+ T       PS  R+PRGNG+G   P  ++ T LEIGKGR++ +G++VAIL +G+ +   + AA  L     + TVAD RF KPLD  L+RQLANEH++LIT+EE ++ GG G+ V  F+    I+
Sbjct:  365 DVAIAEQHAVTLATGMAIGGYNPIVAIYSTFLQRGYDQLIHDVAIMNLPVMFAIDRAGLVGADGQTHQGAFDLSYMRCIPNMVIMAPSDENECRQMLYTGHK-HQGPSAVRYPRGNGMGT--PIESEFTALEIGKGRLVRQGEKVAILSFGTFLANALEAAEAL-----NATVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIM 579          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SHEWM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.156e-60
Identity = 120/217 (55.30%), Postives = 153/217 (70.51%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            D  IAEQHAVT  AG A EG+KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA  P   + T L IGKG I  +G +VAIL +G+     +LA+ +   + +  TVAD RF KPLD +LI++LAN H++L+TVEE ++ GG GS V   L
Sbjct:  365 DAAIAEQHAVTLGAGFACEGLKPVVAIYSTFLQRGYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--PQIEEMTALPIGKGLIKRQGQKVAILNFGT-----LLASVLTAGESLDATVADMRFVKPLDVELIKELANSHDVLVTVEENAIMGGAGSGVLELL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.122e-60
Identity = 121/221 (54.75%), Postives = 158/221 (71.49%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSG 660
            DVGIAEQHAVTFAAGLA +G+KP  AIYS+FLQR YDQ++HDV +Q LPV FA+DRAGLVGADGPTH G+FD+T++ C+PN+ VMAPSDE E   M+ TA  + + P+  R+PRG+G G       +  PL  G+G I  EG  +A+L +GS++Q C+ AA     ++++ TVA+ RF KPLD DL+  LA  HE+L+TVEE +V GG GS V   L+  G
Sbjct:  358 DVGIAEQHAVTFAAGLACDGLKPVVAIYSTFLQRAYDQLIHDVAIQNLPVVFAIDRAGLVGADGPTHAGSFDLTYLRCIPNITVMAPSDENECRQMLYTAFQM-NTPAAVRYPRGSGSGVAQQKEMQMLPL--GRGEIRREGAEIALLAFGSMLQPCLEAA-----EELNATVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGSAVLESLSARG 570          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.122e-60
Identity = 124/222 (55.86%), Postives = 157/222 (70.72%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVT AAGLA E VKP  AIYS+FLQRGYDQ+VHDV LQ LPV FA+DRAGLVGADGPTH G+FD++++ C+PNM + APSDEAE   +++T     D P   R+PRG+G GA LP  +   PL IGKG     G R+A+L +G++V   +  A  L      +TVAD RF +PLD  LIR+LA+ H++L+TVEE +V GG GS V  +L  +G+
Sbjct:  365 DVGIAEQHAVTLAAGLACESVKPVLAIYSTFLQRGYDQLVHDVALQNLPVLFAVDRAGLVGADGPTHHGSFDLSYLRCVPNMTIAAPSDEAECWRLLST-GYHHDGPFAVRYPRGSGPGAALPEADL-DPLAIGKGVCRRRGRRIAVLAFGTLVVPALAVAEAL-----DLTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAGL 579          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_NOSP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.184e-60
Identity = 120/223 (53.81%), Postives = 152/223 (68.16%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DVGIAEQHA+T AAGLA++G++P  AIYS+FLQR YDQ++HDV +Q LPV F +DRAG+VG+DGPTH G +DI ++ C+PN+V+MAP DEAEL  MV T       P   R+PRGNG G  L       PLEIGK  IL  GD V I+ YG++V   + AA +L    I  TV +ARF KPLDT+LI  LA +   +IT+EEG + GGFGS +   L  + IL
Sbjct:  365 DVGIAEQHAITLAAGLATQGMRPVAAIYSTFLQRAYDQIIHDVCIQNLPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIVIMAPKDEAELQRMVVTGVNHTSGPIAMRYPRGNGHGVPLMEEG-WEPLEIGKSEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCIMGGFGSAIAEALMDADIL 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.199e-59
Identity = 119/217 (54.84%), Postives = 148/217 (68.20%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DVGIAEQHAVT AAG+A EG++P  AIYS+FLQRGYDQ++HDV +Q LPV F +DRAG+VGADGPTH G +DI ++ CLPNMV+MAP DEAEL  M+ T     D P   R+PRG+G+G  L       PL IGK   L  GD V +L YG++V      A+ML    +  TV +ARF KPLDT+LI  LA +   ++T+EEG + GGFGS V   L
Sbjct:  364 DVGIAEQHAVTLAAGMACEGMRPVVAIYSTFLQRGYDQIIHDVCIQNLPVFFCLDRAGIVGADGPTHQGMYDIAYLRCLPNMVMMAPKDEAELQQMLVTGINYTDGPIAMRYPRGSGLGVGLMEEG-WEPLPIGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEAL 579          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_TRIEI6.360e-6155.161-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_CYAA56.360e-6155.301-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_VIBVY1.417e-6055.161-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_SYNP21.850e-6055.301-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_VIBVU2.417e-6054.711-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_SHEWM3.156e-6055.301-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_NITMU4.122e-6054.751-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_ALHEH4.122e-6055.861-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS_NOSP79.184e-6053.811-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc ... [more]
DXS_ACAM11.199e-5954.841-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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