FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_RALME (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxs PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.566e-59
Identity = 124/227 (54.63%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFA GLA EG+KP  AIYS+FLQRGYDQ++HDV LQ LPV FA+DRAGLVGADG TH G +DI F+ C+PNM+VM P+DE E   ++ T A   D P+  R+PRG G+G    P  + T L +GKG I  E     G RVAI+ +GS+V   + AA     + +  TVA+ RF KPLD +L++QLA  H+ L+TVEEG ++GG GS V   L  +GI
Sbjct:  365 DVGIAEQHAVTFAGGLACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGVYDIPFLRCIPNMMVMVPADENECRQLL-TTAFQQDCPTAVRYPRGAGVGVATQP--ELTALPVGKGEIRREGHARAGQRVAIMAFGSMVHPALTAA-----EQLDATVANMRFVKPLDVELVKQLAANHDFLVTVEEGATMGGAGSAVLEALAEAGI 583          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.566e-59
Identity = 123/222 (55.41%), Postives = 152/222 (68.47%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DV IAEQHAVTFA G+A +G+KP  AIYS+FLQRGYDQ++HDV LQ LPV FA+DRAGLVGADGPTH GAFD++++ C+PNM VMAPSDE E   ++ TA  + D P+  R+PRG G GA +       P  IGKG +   G +VAIL +GS+V   + AA  L       TVAD RF KPLD +LIR+LA  HE+++TVEE  V GG GS     L   G+
Sbjct:  360 DVAIAEQHAVTFAGGMACDGLKPVVAIYSTFLQRGYDQLIHDVALQNLPVMFALDRAGLVGADGPTHAGAFDLSYLRCIPNMTVMAPSDENECRQLLYTAFQL-DTPTAVRYPRGTGPGAEIQQQMAALP--IGKGVVRRRGKQVAILAFGSMVHPALAAAEAL-----DATVADMRFVKPLDAELIRKLAQTHELIVTVEENVVMGGAGSGCGEALQAMGL 573          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_THIDA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dxs PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.046e-59
Identity = 121/223 (54.26%), Postives = 156/223 (69.96%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DVGIAEQHA+TFAAGLA EGVKP  AIYS+FLQR YDQ++HD+ LQ LPV  A+DRAGLVGADGPTH G+FD++F+ C+P++V+ APSDE E   +++T A + D P+  R+PRG G GA + P  +  P+EIGKG     G  VA+L +GS+V   + AA  L       TVAD RF KPLD DL+ +LA  H +L+T+EE +V GG G+ V   L   GI+
Sbjct:  359 DVGIAEQHALTFAAGLACEGVKPVVAIYSTFLQRAYDQLIHDIALQNLPVTLAIDRAGLVGADGPTHAGSFDLSFLRCVPDLVIAAPSDENECRRLLST-AFLHDGPAAVRYPRGCGTGAAIEPGLE--PVEIGKGVCRRRGRDVALLAFGSLVAPALTAAERL-----DATVADMRFVKPLDVDLVGELAAGHRLLVTLEENAVAGGAGAAVAELLAQLGIV 573          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.490e-59
Identity = 123/224 (54.91%), Postives = 160/224 (71.43%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILD 669
            DVGIAEQHAVTFAAGLA+EG+ P  AIYS+F+QR YDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+D++++  +P M +MAP+DE EL HM+ TA  + ++P   R+PRG  +G  LPP      LEIG+GR L +G+  AIL  G  V   + AA +L+ Q ISV+V DARF KPLD  L++++A  H +++ VEE +V GGFGS V   L+  G LD
Sbjct:  361 DVGIAEQHAVTFAAGLATEGILPVVAIYSTFMQRAYDQLIHDVALQDLPVIFALDRAGLVGADGATHAGAYDLSYLRTVPGMTIMAPADENELRHMLHTAVAL-NKPVALRYPRGTALG--LPPEPPHV-LEIGRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVA-MHGVVLVVEENAVQGGFGSAVLESLSNQGALD 579          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CUPTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxs PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.558e-59
Identity = 126/227 (55.51%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-----GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVTFA GLA EG+KP  AIYS+FLQRGYDQ++HDV LQ LPV FA+DRAGLVGADG TH GA+DI ++ C+PNM+VM PSDE E   ++ T A   D P+  R+PRG+G GA +  +    P+ +GKG +  E     G RV  L +GS+VQ  + AA  L       TVAD RF KPLD  L+++LA +H+ L+TVEEGSV GG GS V   L  +GI
Sbjct:  365 DVGIAEQHAVTFAGGLACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLPVVFALDRAGLVGADGATHAGAYDIAYLRCIPNMMVMTPSDENECRQLL-TTAFQQDCPTAVRYPRGSGPGAAIAADL--APVPVGKGVVRREAGARAGHRVGFLAFGSMVQPALGAAEAL-----DATVADMRFVKPLDVALVKRLAADHDYLVTVEEGSVMGGAGSAVLEALAEAGI 583          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 118/223 (52.91%), Postives = 147/223 (65.92%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGIL 666
            DVGIAEQHAVT A GLA EG++P   IYS+FLQR +DQ++HD+ +Q LPV F MDRAG+VGADGPTH G +DI ++ C+PNM +MAP DEAEL  MV T       P   R+PRGNG+G  L        L IGKG IL  GD + +LGYG++V   +  A +L    I  TV +ARF KPLDT+LI  LA     ++T+EEG  +GGFGS V   L  + IL
Sbjct:  365 DVGIAEQHAVTLAGGLACEGMRPVVTIYSTFLQRAFDQIIHDICIQNLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMVVTGINHTSGPIAMRYPRGNGLGVPLMEEG-WEALPIGKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGSAVLEALQDANIL 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SHEHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxs PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.774e-59
Identity = 116/217 (53.46%), Postives = 150/217 (69.12%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            D  IAEQHAVTF AG A EG KP  AIYS+FLQRGYDQ++HDV LQ+LPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T    +D P+  R+PRG+  GA        T + IGKG +  +G ++AIL +G+ +  C++AA  L       TVAD RF KPLD +L+++LA  H++L+TVEE ++ GG GS V   L
Sbjct:  365 DAAIAEQHAVTFGAGFACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDRGGIVGADGPTHQGAFDLSFMRIVPNMVIMAPSDENECRQMLYTGYCYNDGPTAVRYPRGSATGA--KQVETMTAMPIGKGLLKRQGQKIAILNFGTTLASCLVAAEAL-----DATVADMRFVKPLDVELVKELAANHDVLVTVEENAIMGGAGSGVLELL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_SYNAS (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dxs PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.015e-58
Identity = 117/217 (53.92%), Postives = 154/217 (70.97%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DVGIAEQH+VTFAAGLA+EG+ P  AIYSSFLQR YDQ++HDV LQ LPV FA+DRAG VG DGPTH G FD++++  +PNMVVMAP DE EL HM+ T AV   +P+  R+PRG+G+G  +  +++   LE+GKG +L EG  +AIL  G  V   + AA  L+ + I  TV +ARF KPLD +L+ ++    + ++TVEE  + GGFGS +  FL
Sbjct:  378 DVGIAEQHSVTFAAGLATEGILPVVAIYSSFLQRAYDQILHDVCLQNLPVVFALDRAGFVGEDGPTHHGLFDLSYLRSIPNMVVMAPKDENELQHMLHT-AVACGKPAAVRYPRGSGVGVTM--DSQPFSLELGKGEVLCEGGSLAILAVGDPVHPALTAAVQLREEGIYATVVNARFVKPLDRELLLRIVRSFKKILTVEENVLTGGFGSAILEFL 591          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.015e-58
Identity = 116/217 (53.46%), Postives = 156/217 (71.89%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFL 648
            DVGIAEQHAVT AAG++ +G+KP  AIYS+FLQR +DQ++HDV +Q LPV F +DRAG+VGADGPTH G +DI++M  +PN V+MAP DEAEL  M+ T ++    P+  R PRG+G+G V   +    PL+IG+G IL EGD V I+ YGS+VQ     AN+LK++ IS  + +ARF +PLD DLI  L  + + ++T+EEG+ VGGFGS +   L
Sbjct:  365 DVGIAEQHAVTLAAGMSCDGLKPVVAIYSTFLQRAFDQLIHDVGIQNLPVSFVLDRAGIVGADGPTHQGQYDISYMRAIPNFVLMAPKDEAELQRMLIT-SINYKGPTALRIPRGSGLG-VAVMDEGWEPLKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEML 579          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 118/223 (52.91%), Postives = 158/223 (70.85%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGIL 666
            DV IAEQHAVT A G+A  G  P  AIYS+FLQRGYDQ++HD+ +  LPV FA+DRAGLVGADG TH GAFD++FM C+PNMV+MAPSDE E   M+ T       PS  R+PRG+G+G  +    + T LEIGKGR++ +G++VAIL +G+ +   + AA     ++++ TVAD RF KPLD  LIRQLA+EH++L+T+EE ++ GG G+ V  F+    I+
Sbjct:  365 DVAIAEQHAVTLATGMAIAGDHPIVAIYSTFLQRGYDQLIHDIAIMDLPVMFAIDRAGLVGADGQTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGHK-HTGPSAVRYPRGSGMGTEI--EKEFTALEIGKGRVVRKGEKVAILSFGTFLPNALEAA-----KNLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAGGAGAGVIEFMMKEKII 579          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_RALME1.566e-5954.631-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_CHRVO1.566e-5955.411-deoxy-D-xylulose-5-phosphate synthase OS=Chromob... [more]
DXS_THIDA2.046e-5954.261-deoxy-D-xylulose-5-phosphate synthase OS=Thiobac... [more]
DXS_MAGSM3.490e-5954.911-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_CUPTR4.558e-5955.511-deoxy-D-xylulose-5-phosphate synthase OS=Cupriav... [more]
DXS_MICAN5.953e-5952.911-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_SHEHH7.774e-5953.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SYNAS1.015e-5853.921-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_PROMP1.015e-5853.461-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_VIBPA2.262e-5852.911-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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