FC931308

Overview
NameFC931308
Unique NameFC931308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931308 vs. ExPASy Swiss-Prot
Match: ILVH_MYCBO (Acetolactate synthase small subunit OS=Mycobacterium bovis GN=ilvH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  446 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEV 664
            ++HTLS+LV D PGVL  V  +F+RRG+NI+SLAVG  E +  SR+T VV A D  + ++ +QL KLI++ ++
Sbjct:    4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKI 76          

HSP 2 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 2
Query:    5 LIKVNADPKFRAEIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLG 223
            LIKV AD   R+++   V++FRA ++D+S  SLT+E TG+ GK+ A+ R L  FGIREIA++G ++L R   G
Sbjct:   91 LIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163          
BLAST of FC931308 vs. ExPASy Swiss-Prot
Match: ILVH_MYCAV (Acetolactate synthase small subunit OS=Mycobacterium avium GN=ilvH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 35/76 (46.05%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  446 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 673
            ++HTLS+LV   PGVL  V  +F+RRG+NI+SLAVG  E + +SR+T VV A +  + ++ +QL KLI++ ++ +L
Sbjct:    4 QTHTLSVLVEAKPGVLARVAALFSRRGFNIESLAVGATEQKDMSRMTIVVSAEETPLEQITKQLNKLINVIKIVEL 79          
BLAST of FC931308 vs. ExPASy Swiss-Prot
Match: ILVH_METJA (Probable acetolactate synthase small subunit OS=Methanocaldococcus jannaschii GN=ilvH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  452 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 673
            H +S LV + PGVL  ++G+F RRG+NI S+ VG  E   +SR+T VV   D+ + ++++QL KLID+ +V +L
Sbjct:    9 HVISALVLNKPGVLQRISGLFTRRGFNISSITVGITENPQISRVTIVVNGDDKILEQVIKQLNKLIDVIKVSEL 82          
BLAST of FC931308 vs. ExPASy Swiss-Prot
Match: ILVH_BACSU (Acetolactate synthase small subunit OS=Bacillus subtilis GN=ilvH PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  458 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES-ISKLMQQLYKLIDLHEVRDLTH 679
            +++ V +  GVLN +TG+F +R YNI+S+ VGH ET G+SRIT VV    E+ + +L +QL K ID+ +V D+T+
Sbjct:    5 ITLTVVNRSGVLNRITGLFTKRHYNIESITVGHTETAGVSRITFVVHVEGENDVEQLTKQLNKQIDVLKVTDITN 79          
The following BLAST results are available for this feature:
BLAST of FC931308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ILVH_MYCBO2.560e-1249.32Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_MYCAV1.271e-1146.05Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_METJA3.697e-1144.59Probable acetolactate synthase small subunit OS=Me... [more]
ILVH_BACSU6.305e-1146.67Acetolactate synthase small subunit OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC34103G03EF PostHarvP1 Citrus clementina cDNA clone C34103G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931308 ID=FC931308; Name=FC931308; organism=Citrus clementina; type=EST; length=693bp
AATGCTCATAAAAGTGAATGCAGATCCAAAGTTCCGTGCTGAGATCAGGT
GGTTAGTGGACATATTTAGAGCGAAAATTGTGGATATCTCAGAATACTCT
CTGACAATTGAGGTAACTGGAGATCCGGGGAAGATGGTTGCTGTTCAAAG
GAACTTAAGCAAGTTTGGGATCAGAGAAATTGCGAGAACTGGAAAGATTG
CTTTGAGAAGGGAAAAGTTGGGTGCTTCTGCTCCATTTTGGCGATTTTCA
GCAGCTTCATATCCAGATCTTAATGAAACGCCTACTATTGACGGTCTCGT
TGGGGCAGGACATAGACCACTTCTCAGTGAAACTGATACCGTAGAGGGAG
ATGTTTATCCGGTTGAACCATCTGATGGCTTGACTGTAAATCAAGTTCTT
GATCCGCACTGGGGTGTTCTAAATGATGATGATACAAGTGGACTTCGATC
ACATACTTTATCCATGCTTGTGAATGACTCTCCAGGAGTTCTTAACATTG
TTACAGGGGTTTTTGCTCGAAGGGGCTATAACATTCAGAGTTTGGCTGTT
GGACATGCAGAAACTGAGGGGCTCTCACGAATTACAACAGTTGTTCCCGC
TACAGATGAATCAATTAGCAAGTTGATGCAGCAACTTTATAAGCTAATAG
ATCTACATGAGGTTCGGGATCTTACTCATTTGCCATTTGCTGA
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