FC931320

Overview
NameFC931320
Unique NameFC931320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11747 contig Ccv1_Contig11747:528..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: METC_YEAST (Putative cystathionine beta-lyase OS=Saccharomyces cerevisiae GN=IRC7 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 61/218 (27.98%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    5 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGG 652
            K G+     DP+  + +E  L   N ++ F ESP +  +   D+  +  +  K G    +D T+ATPL   A + G D+ + + TK++GGH+D+L G  S +E+    +R+ +  +          L +RGM+TLHLR+++    AL +A  L    +V++V +P  +  P H    +   G  G+ S  +    T     K ++ +K+  +  S+GG
Sbjct:  124 KFGVETDYYDPSIGKDIEK-LVKPNTTVIFLESPGSGTMEVQDIPALVSVAKKHGIKTILDNTWATPLFFDAHAHGIDISVEAGTKYLGGHSDLLIGLASANEECWPLLRSTYDAMAMLPGAEDCQLALRGMRTLHLRLKEVERKALDLAAWLGNRDEVEKVLHPAFEDCPGHEYWVRDYKGSSGLFSIVLKNGFTRAGLEKMVEGMKVLQLGFSWGG 340          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: YFHE_SCHPO (Uncharacterized trans-sulfuration enzyme C23A1.14c OS=Schizosaccharomyces pombe GN=SPAC23A1.14c PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 52/148 (35.14%), Postives = 86/148 (58.11%), Query Frame = 2
Query:   23 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKIL 463
            T ++ + ++G   A+   +V   + E+P NP     D+    +L  KKGAI+ +D TFA P  Q AL LGAD V+HSATK++ GH+DVLAG  +  ++  +  ++     LG  L+P  A+L++R ++T  LR+ + +     +A+ L
Sbjct:  135 TGLETSFIDGKCDAIGEGDV--IWLETPLNPLGIAFDIPFYKELAKKKGAILVVDSTFAPPPIQDALVLGADYVVHSATKYLAGHSDVLAGVTASKDRSKILDLKADRAYLGTILHPQQAFLLLRSLRTFPLRIAKHSENGFLVAQHL 280          
BLAST of FC931320 vs. ExPASy Swiss-Prot
Match: MET7_NEUCR (Cystathionine gamma-synthase OS=Neurospora crassa GN=met-7 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 56/209 (26.79%), Postives = 95/209 (45.45%), Query Frame = 2
Query:   38 ADMEGLEAALNNNNVSL-FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG--CISGSEKLVTQIRN-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLK-SHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 649
            +D++ LE  L +    L  F E P NP L C D+  + +L  K    V +D T  T  N   L   AD+V+ S TK   G  +V+ G    + + +  + +++ +   L     P     + R  +    R+ + N+ A  + ++L+ HP VK ++YP    S   +        G+GG++S  + G   A + F DA++     PS G
Sbjct:  355 SDLDDLETRLESGERYLALFCEFPGNPLLTCPDLVRIRELADKYEFAVVVDETIGTFANVNVLQF-ADIVVSSLTKIFSGDCNVMGGGAIFNPNSRYYSALKSFVQQQLEDTYWPEDVIFMERNSRDFVARIDRVNANAEAICRVLQDHPLVKTLYYPKYNDSRANYEAVKLPQGGYGGLISVVLKGKKQA-VAFYDAIETAK-GPSLG 560          
The following BLAST results are available for this feature:
BLAST of FC931320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
METC_YEAST1.619e-2027.98Putative cystathionine beta-lyase OS=Saccharomyces... [more]
YFHE_SCHPO8.881e-1935.14Uncharacterized trans-sulfuration enzyme C23A1.14c... [more]
MET7_NEUCR8.051e-1226.79Cystathionine gamma-synthase OS=Neurospora crassa ... [more]

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Properties
Property NameValue
Genbank descriptionC34103H03EF PostHarvP1 Citrus clementina cDNA clone C34103H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931320 ID=FC931320; Name=FC931320; organism=Citrus clementina; type=EST; length=725bp
GCCCAAAATGGGAATCACGGCTACGGTGATTGACCCAGCTGATATGGAAG
GTTTGGAGGCAGCACTCAACAATAACAATGTCTCACTATTCTTCACCGAG
TCTCCAACCAATCCATTCCTGAGATGTGTGGATGTCAAACTGGTTTCAGA
TCTTTGCCATAAGAAAGGAGCAATAGTTTGCATAGATGGAACCTTTGCCA
CACCTCTCAATCAGAAGGCCCTCAGCCTTGGTGCTGATCTTGTACTGCAC
TCTGCAACAAAATTCATTGGTGGCCACAATGATGTCCTTGCTGGGTGCAT
TAGTGGTTCAGAGAAGTTAGTTACACAAATTCGTAATTTGCATCATGTTT
TGGGTGGTGCTCTCAACCCGAATGCCGCGTATTTGATCATTCGAGGCATG
AAGACATTGCATCTTCGTGTACAGCAACAAAATTCAACTGCGTTGAGGAT
GGCCAAGATTTTAGAGGCACATCCAAAGGTGAAGCGCGTTCACTATCCAG
GCTTGAAGAGTCATCCTGAGCATCACATTGCCACACAGCAAATGACTGGT
TTTGGTGGGGTAGTTAGTTTTGAGGTTGATGGAGACCTAACGGCCACCAT
AAAATTTATTGATGCCTTGAAAATCCCATATATTGCTCCATCCTTCGGTG
GCTGTGAGAGCATTGTTGATCAGCCAGCTATAATGTCGTATTGGGACCTT
AGCCATCGGAGAAGCTCAGTATGGG
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