FC931322
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21 Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = 1 Query: 100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ L + + +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH GL+VRGQ Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21 Identity = 48/128 (37.50%), Postives = 82/128 (64.06%), Query Frame = 1 Query: 103 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 + F++I+R+ +VDG K+ +AL +KGIG A + K +D ++R GELS ++ + + + + ++P+W NR+KDY+ G +V++ L +R+D+ER KKI++ RG+RH GL+VRGQ Sbjct: 5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQ 132
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21 Identity = 51/129 (39.53%), Postives = 78/129 (60.47%), Query Frame = 1 Query: 100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ L + N +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH GL+VRGQ Sbjct: 17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20 Identity = 48/131 (36.64%), Postives = 81/131 (61.83%), Query Frame = 1 Query: 94 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS ++ L + + ++P W LNRQ D G+ ++ + + L++DL LKK R +RGLRH GL+VRGQ Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTIDKFEE-QLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQ 130
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19 Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 109 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 540 F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+ E+ L V+ + Q +P W NR+KDY+ GK ++ + L R D+ER KI + RG+RH +GL+VRGQ KKR Sbjct: 7 FKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19 Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1 Query: 100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 +++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D + VV+N +IP W NR KD G ++ + M + DD+ LKKIR +RG+RH G +VRGQ Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQ 132
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19 Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 1 Query: 109 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++ + V + +P W LNR+KD G+ ++S +D D+ERL K++ +RG+RH G +VRGQ Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18 Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 103 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 ED ++ +R+ T++DG + + ALT + GIG R A I+ +KADVD G+L ++ ++ V N +P+W N QKDY G+ + N L + R D+ R+K I ++RG+RH G +VRGQ Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18 Identity = 46/127 (36.22%), Postives = 79/127 (62.20%), Query Frame = 1 Query: 106 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 +F++I+RV ++ G + +++AL IKGIG A V KK +D + G LS E++ L + + +P W LNR+KD G ++++ L + +R+D+E +KKI++++G+RH GL+VRGQ Sbjct: 4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQ 130
BLAST of FC931322 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18 Identity = 44/129 (34.11%), Postives = 82/129 (63.57%), Query Frame = 1 Query: 100 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 486 +++ + I+R+ +T++DG +++ ++LT I+GIG A +C+K +D + G LS +++ L V N + P WFLNR+KD + GK ++ L + + D++ +KK+++ +G+RH GL+VRGQ Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129 The following BLAST results are available for this feature:
BLAST of FC931322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931322 ID=FC931322; Name=FC931322; organism=Citrus clementina; type=EST; length=721bpback to top |