FC931323

Overview
NameFC931323
Unique NameFC931323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15321 contig Ccv1_Contig15321:2..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.451e-63
Identity = 71/105 (67.62%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M ++++  N+ ++VNFLVSLLKKNW NVR LY+KSTMG
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMG 211

HSP 2 Score: 106.686 bits (265), Expect = 7.451e-63
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E LKK
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.451e-63
Identity = 71/105 (67.62%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M ++++  N+ ++VNFLVSLLKKNW NVR LY+KSTMG
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMG 211

HSP 2 Score: 106.686 bits (265), Expect = 7.451e-63
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E LKK
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.267e-62
Identity = 72/105 (68.57%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KKVLC+ VAVG++ + +E++  N+ +S+NFLVSLLKKNW NVR L +KSTMG
Sbjct:  106 YDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMG 210

HSP 2 Score: 107.842 bits (268), Expect = 1.267e-62
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+  ++L EAI+ +++ S E   R F ETIELQIGLKNYDPQKDKRFSGS++L HIPRP MKVC+ GD  H++EA    +  M  + LKK
Sbjct:    1 MSKVSRESLNEAIAEVLKGSSE-KPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKK 91
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.154e-62
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            YHAFLAS+SVIKQIPRLLGPGLNKAGKFP  +   ++LE  V +TK ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKNW NVRCLY+KSTMG
Sbjct:  105 YHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMG 207

HSP 2 Score: 111.309 bits (277), Expect = 2.154e-62
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+ +D LRE++S++V+ +K T  R F ET+ELQIGLKNYDPQKDKRFSGSV+LP +PRP+M+V   GD +H E+A  IG+D   VE LKK
Sbjct:    1 MSKISNDVLRESVSALVEGAK-TKPRKFQETVELQIGLKNYDPQKDKRFSGSVRLPFVPRPRMRV-RAGDVKHCEQAGAIGVDAKGVEDLKK 90
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.809e-62
Identity = 71/105 (67.62%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M ++++  N+ ++VNFLVSLLKKNW NVR LY+KSTMG
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMG 211

HSP 2 Score: 104.76 bits (260), Expect = 2.809e-62
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +E + + + +MD+E LKK
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDERKAVDIPHMDIEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.662e-62
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            Y+AF+ASE +IKQIPRLLG  L+KAG+FPT V+H + L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE+ +   + M+ NFLVSLLKKNW NV  L +KSTMGPS
Sbjct:  107 YNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPS 213

HSP 2 Score: 118.242 bits (295), Expect = 3.662e-62
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+ S  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP +PRP M  C+ GDA   + A+ +G+D M V+ LKK
Sbjct:    1 MSKITSSGVREYVHKLLEYSTETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPQVPRPNMTTCIFGDAFDFDRAKSLGVDAMSVDDLKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.059e-61
Identity = 69/105 (65.71%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+ +TH E++ +KV+E K+T+KFQ+K+VLC+ VAVG++ M ++++  N+ ++VNFLVSLLKKNW NVR LY+KSTMG
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMG 211

HSP 2 Score: 106.686 bits (265), Expect = 1.059e-61
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E LKK
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.060e-61
Identity = 67/107 (62.62%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            Y AFLASES+++Q+P+LLGPGLNK GKFPTL+TH E + SK+N+ K+TVKFQLKKVLC+ VAVG++ + E ++  N+  S+NFLVSLLKK W N++ LY+K++MGPS
Sbjct:  107 YDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPS 213

HSP 2 Score: 105.145 bits (261), Expect = 3.060e-61
Identity = 48/92 (52.17%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+ SD +R  +S + + ++E+ KR F ET+ELQI LKNYD +KDKRFSG +K+  + +PK+ VC+  D QH +EA KIG ++MD+E LKK
Sbjct:    1 MSKISSDQVRSIVSQLFKEAQES-KRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTKPKLSVCVFADQQHCDEATKIGAEFMDIEALKK 91
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.408e-54
Identity = 65/107 (60.75%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            Y AFL SES+IK +PRL+GP +++ GKFPT+    ESL  KV E ++TVKFQLKKVLC+G  VG++ M E+Q+ QNV M++NFLVSLLKKNW N++  Y+KSTMG S
Sbjct:  104 YDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKS 210

HSP 2 Score: 93.9745 bits (232), Expect = 9.408e-54
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+    L EAI ++++  KE   R F E+I+LQ+ LKNYDPQKDKRFSGSV+LPH+ RP+M VC+L D  H + A+K  +  M+ E LKK
Sbjct:    1 MSKIPPALLSEAIQNVLKDRKE---RKFKESIDLQVNLKNYDPQKDKRFSGSVRLPHVCRPRMTVCLLCDLVHEDIAKKNDVPTMNQEELKK 89
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.053e-42
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L EA+  ++ +  + N   F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC LGD QH +EA+ + + +MD+E LKK
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRNXXKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCXLGDQQHCDEAKAVDIPHMDIEALKK 92

HSP 2 Score: 90.1225 bits (222), Expect = 1.053e-42
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 558
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH   + +KV+E K+ VKFQ+K+VLC+
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165
The following BLAST results are available for this feature:
BLAST of FC931323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL10A_HUMAN7.451e-6367.6260S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN7.451e-6367.6260S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_CAEEL1.267e-6268.5760S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_CHLRE2.154e-6270.4860S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_MOUSE2.809e-6267.6260S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]
RL10A_CANAL3.662e-6264.4960S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL10A_MACFA1.059e-6165.7160S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_DICDI3.060e-6162.6260S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_TRYBR9.408e-5460.7560S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_PIG1.053e-4253.8560S ribosomal protein L10a (Fragment) OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionC34103H06EF PostHarvP1 Citrus clementina cDNA clone C34103H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931323 ID=FC931323; Name=FC931323; organism=Citrus clementina; type=EST; length=722bp
GAGGGTTTCTTTTTCGTCTTCGAAGAAAAAAAAATCTGTAAAGGACTCCA
AGCGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCAT
CTCTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACCG
AGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGAC
AAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGAT
GAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAGA
TTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAAATTGAACAAGAA
CAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCAT
CAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAAC
AAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTC
CAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGC
TTTGCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGGAGCAGATC
TTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAA
AAACTGGTAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCCTT
CAACCGCATCTTTTAAGAAATC
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