FC931323
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16 Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 3 Query: 90 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKXXXXXXXXXXXXXXXSCFLGIRVCHQADSSFVGSWSQQGRKVPYP 473 R+ +++I+ KE +R F ET EL + LKNYDP KDKR G+ KLP++ + KVC+LGDAQ E A+K + +MDV+ LK + FLG + +G +G K P P Sbjct: 6 RQGVATIL---KEKKERKFGETGELHLALKNYDPDKDKRCGGTDKLPNVTKANYKVCVLGDAQACEAAQKENIPHMDVDALKALYKDKMFFKKLARKYNTFLGSDSVGRQLQKILGPGLNKGGKFPPP 130 HSP 2 Score: 75.8702 bits (185), Expect = 2.483e-13 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 Query: 382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 579 Y+ FL S+SV +Q+ ++LGPGLNK GKFP + E L+ K+NE + V QLKKVLCMGV GN+ Sbjct: 100 YNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_PYRFU (50S ribosomal protein L1P OS=Pyrococcus furiosus GN=rpl1p PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.737e-16 Identity = 34/108 (31.48%), Postives = 57/108 (52.78%), Query Frame = 1 Query: 382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 Y F+A ++ +I R LG L K P +V L V + K TV+ QLK + VG M +E+I +N++ +N ++ L++ V+ +Y+K+TMGP+ Sbjct: 104 YDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPA 211 HSP 2 Score: 46.9802 bits (110), Expect = 8.737e-16 Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 3 Query: 90 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338 R+ I V+ +K K RNFT+++E+ + LK+ D ++ + RF V LPH +K+ ++ D E A K+GLD + L++ Sbjct: 5 RQKIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAELEE 89
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METHJ (50S ribosomal protein L1P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl1p PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 3.240e-15 Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 1 Query: 391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 FLA V+ + R LGP L G+ P + + V + +VK + K + + VG +M EE+I +N+ + ++S L+ VR +Y+K+TMGPS Sbjct: 107 FLAETQVMSLVGRWLGPRLGPRGRMPQPIPAGTDIRPIVERLRKSVKIRTKDKMSFSLKVGTTAMSEEEIAENIDAVLKRILSKLEMGDFQVRSVYIKTTMGPS 210 HSP 2 Score: 41.2022 bits (95), Expect = 3.240e-15 Identity = 21/72 (29.17%), Postives = 41/72 (56.94%), Query Frame = 3 Query: 99 ISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLD 311 I ++ + ++ +R FTE++++ I LKN D + K R ++ LPH +K+ +LG V +A + G++ Sbjct: 8 IDALKKAKEQAPERKFTESVDMTINLKNIDMSQPKNRIDETILLPHGNGRVVKIAVLGSGDIVTQARESGVE 79
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_UNCMA (50S ribosomal protein L1P OS=Uncultured methanogenic archaeon RC-I GN=rpl1p PE=3 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 5.783e-14 Identity = 29/104 (27.88%), Postives = 53/104 (50.96%), Query Frame = 1 Query: 391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 F+A + + I + LG L GK P + Q + + + K ++K + K L +G +M E+I +N+ + L + L+K N+ +Y+K+TMGP+ Sbjct: 106 FIAETAYMPTIGKRLGTVLGPRGKMPAPLPPQADVTALITRQKKSIKIRSKDRLTFHATIGTETMTPEEIAENIDAIIKRLETKLEKGKQNIHAIYVKTTMGPA 209 HSP 2 Score: 42.743 bits (99), Expect = 5.783e-14 Identity = 25/79 (31.65%), Postives = 40/79 (50.63%), Query Frame = 3 Query: 84 ALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM 317 A +E + ++ + KRNF+E+++L I LKN D + K R + LP +KV + + AEK G DY+ Sbjct: 2 ARKETVEAVKKALASRPKRNFSESVDLAINLKNIDMSQPKNRVDEDIILPSGLGKTIKVAVFAKGEVAVNAEKAGADYV 80
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METJA (50S ribosomal protein L1P OS=Methanocaldococcus jannaschii GN=rpl1p PE=1 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 2.777e-13 Identity = 31/104 (29.81%), Postives = 50/104 (48.08%), Query Frame = 1 Query: 391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 F+A ++ I R +G L GK P V +++ V K TV + V VGN M +EQI N++ +N + +K +++ Y+K TMGP+ Sbjct: 105 FIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPA 208 HSP 2 Score: 43.5134 bits (101), Expect = 2.777e-13 Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 3 Query: 90 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338 REA+ V+ ++E K RNFT++ E LK D +K + R V LPH + K+ ++G ++AE++GL + E +++ Sbjct: 3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEE 87
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METKA (50S ribosomal protein L1P OS=Methanopyrus kandleri GN=rpl1p PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 3.612e-13 Identity = 27/104 (25.96%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 F A ++ + R+LGP L GK V + + + T + +++ + +G +ME EQ+ +N + + S L+K+W + +Y+K+TMGP+ Sbjct: 107 FYAQVDLMPDVGRVLGPVLGPRGKMAKPVPPNADIRALIERAHRTARVRMRDQPVIHTVIGARNMEPEQLAENAMAVLREITSELEKSWAQIDSVYVKTTMGPA 210 HSP 2 Score: 40.817 bits (94), Expect = 3.612e-13 Identity = 24/90 (26.67%), Postives = 45/90 (50.00%), Query Frame = 3 Query: 72 LQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338 + + L E + +V+YS R F ET+++ + +K D +R V LPH + VC++ + + EAE+ G ++ E L++ Sbjct: 3 ITEEDLIEPLRKVVEYSPP---RRFLETVDMIVNVKGVDLSDPSQRIDKEVVLPHGRGKPVNVCVIAEGEMAREAEEAGATVINREKLEE 89
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METS3 (50S ribosomal protein L1P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl1p PE=3 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 1.028e-12 Identity = 28/103 (27.18%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGP 699 F+A ++ + R LGP L K P V L+ + ++TVK +K+ + + VG+ M +E + +N++ + L L K ++ +++K+TMGP Sbjct: 105 FIAQADMMPLVGRFLGPILGPRNKMPKPVPASIKLDPLLERLQSTVKVGIKQQPAIQIIVGSQDMSDEDLAENIETVLTVLDRHLDKGRNQIKSMFIKTTMGP 207 HSP 2 Score: 40.817 bits (94), Expect = 1.028e-12 Identity = 20/88 (22.73%), Postives = 53/88 (60.23%), Query Frame = 3 Query: 90 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG----LDYMDVEGLKK 338 +E + ++ + +++ RNFT+++++ + +++ D +K + RF+ V LP+ ++K+ ++ D + + +A+ G ++ D+E L K Sbjct: 3 QEVLEAVKEAKEQSKPRNFTQSVDMIVNIRDLDVKKPENRFNEEVTLPNGRGKEVKIGVIADGELIVQAKDAGVALVINKADLEELGK 90
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_NANEQ (50S ribosomal protein L1P OS=Nanoarchaeum equitans GN=rpl1p PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 1.080e-11 Identity = 37/118 (31.36%), Postives = 56/118 (47.46%), Query Frame = 1 Query: 382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-----------ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 YH ++ + + LLG L GK P Q E+L K+N T V+ +KK + GV +G ME+E I +N +N ++S L + N+ +YLK TMGP+ Sbjct: 95 YHVVAQADLMPELGKSLLGRFLGIRGKMPNPKAGQILPPNLNEKMLEALREKLNNT---VRVNVKKHVTFGVPIGTEDMEDEAIAENADTVINEIISQLPQGKQNIDSVYLKLTMGPA 209 HSP 2 Score: 37.3502 bits (85), Expect = 1.080e-11 Identity = 26/71 (36.62%), Postives = 37/71 (52.11%), Query Frame = 3 Query: 111 VQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV 323 V+ ++E KR FT+T EL LKN D +K R S + LP KM + + ++ E AEK Y D+ Sbjct: 7 VKKAREGKKRRFTQTFELIFNLKNVDLRK-YRLSTYIVLPRGRGKKMPILAIVGPENKELAEK----YFDI 72
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METBU (50S ribosomal protein L1P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl1p PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 1.403e-11 Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 1 Query: 391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 F+A + QI + LG L GK P +T +++ +N TK +V+ + K L V+VG M+ E++ +N++ + L L+K N++ +Y+ +TMG S Sbjct: 106 FIAEVQYMAQIGKALGAILGPRGKMPVPLTPDKNVADLINSTKNSVRIRSKDKLTFHVSVGRRDMDVEKLAENIETVLGRLEHSLEKGKHNLKSVYVTTTMGNS 209 HSP 2 Score: 32.3426 bits (72), Expect = 1.403e-11 Identity = 20/74 (27.03%), Postives = 37/74 (50.00%), Query Frame = 3 Query: 108 IVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 326 + Q + + +R F+E++++ I LKN D + K R + LP+ MK+ + + A+ G DY+ E Sbjct: 10 VKQLIEGSPERKFSESLDIAINLKNLDMSQPKNRVDEEIILPNGLGKTMKIAVFAKGEVGLNAKDAGCDYILTE 83
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_NATPD (50S ribosomal protein L1P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl1p PE=3 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 3.070e-11 Identity = 32/104 (30.77%), Postives = 53/104 (50.96%), Query Frame = 1 Query: 391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702 F+A +++ I R LG L GK PT + + + VN K TV+ + + VG M+ + I NV + + L + L+K N+ +Y+K+TMGP+ Sbjct: 104 FIAEADLMQDIGRYLGTVLGPRGKMPTPLQPDDDVVETVNRMKNTVQVRSGERRTFHTRVGAEDMDADAIADNVDVILRRLFTDLEKGPQNIDTVYVKTTMGPA 207 HSP 2 Score: 36.5798 bits (83), Expect = 3.070e-11 Identity = 23/87 (26.44%), Postives = 43/87 (49.43%), Query Frame = 3 Query: 78 SDALREAISSIVQYSKETNKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLK 335 +D++ +A+S + S E RNF ET++L I L++ D + R S+ LP + + + + AE + D +D + L+ Sbjct: 2 ADSIEDAVSRAMSESPE---RNFRETVDLAINLRDLDLADPNNRVDESIVLPSGTGQDTHIVVFAEGETALRAEDVADDVLDSDDLE 85 The following BLAST results are available for this feature:
BLAST of FC931323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931323 ID=FC931323; Name=FC931323; organism=Citrus clementina; type=EST; length=722bpback to top |