FC931323

Overview
NameFC931323
Unique NameFC931323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15321 contig Ccv1_Contig15321:2..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   90 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKXXXXXXXXXXXXXXXSCFLGIRVCHQADSSFVGSWSQQGRKVPYP 473
            R+ +++I+   KE  +R F ET EL + LKNYDP KDKR  G+ KLP++ +   KVC+LGDAQ  E A+K  + +MDV+ LK                + FLG     +     +G    +G K P P
Sbjct:    6 RQGVATIL---KEKKERKFGETGELHLALKNYDPDKDKRCGGTDKLPNVTKANYKVCVLGDAQACEAAQKENIPHMDVDALKALYKDKMFFKKLARKYNTFLGSDSVGRQLQKILGPGLNKGGKFPPP 130          

HSP 2 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 579
            Y+ FL S+SV +Q+ ++LGPGLNK GKFP  +   E L+ K+NE +  V  QLKKVLCMGV  GN+
Sbjct:  100 YNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_PYRFU (50S ribosomal protein L1P OS=Pyrococcus furiosus GN=rpl1p PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.737e-16
Identity = 34/108 (31.48%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            Y  F+A   ++ +I R LG  L    K P +V      L   V + K TV+ QLK    +   VG   M +E+I +N++  +N ++  L++    V+ +Y+K+TMGP+
Sbjct:  104 YDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPA 211          

HSP 2 Score: 46.9802 bits (110), Expect = 8.737e-16
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 3
Query:   90 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A K+GLD +    L++
Sbjct:    5 RQKIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAELEE 89          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METHJ (50S ribosomal protein L1P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.240e-15
Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            FLA   V+  + R LGP L   G+ P  +     +   V   + +VK + K  +   + VG  +M EE+I +N+   +  ++S L+     VR +Y+K+TMGPS
Sbjct:  107 FLAETQVMSLVGRWLGPRLGPRGRMPQPIPAGTDIRPIVERLRKSVKIRTKDKMSFSLKVGTTAMSEEEIAENIDAVLKRILSKLEMGDFQVRSVYIKTTMGPS 210          

HSP 2 Score: 41.2022 bits (95), Expect = 3.240e-15
Identity = 21/72 (29.17%), Postives = 41/72 (56.94%), Query Frame = 3
Query:   99 ISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLD 311
            I ++ +  ++  +R FTE++++ I LKN D  + K R   ++ LPH     +K+ +LG    V +A + G++
Sbjct:    8 IDALKKAKEQAPERKFTESVDMTINLKNIDMSQPKNRIDETILLPHGNGRVVKIAVLGSGDIVTQARESGVE 79          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_UNCMA (50S ribosomal protein L1P OS=Uncultured methanogenic archaeon RC-I GN=rpl1p PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 5.783e-14
Identity = 29/104 (27.88%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            F+A  + +  I + LG  L   GK P  +  Q  + + +   K ++K + K  L     +G  +M  E+I +N+   +  L + L+K   N+  +Y+K+TMGP+
Sbjct:  106 FIAETAYMPTIGKRLGTVLGPRGKMPAPLPPQADVTALITRQKKSIKIRSKDRLTFHATIGTETMTPEEIAENIDAIIKRLETKLEKGKQNIHAIYVKTTMGPA 209          

HSP 2 Score: 42.743 bits (99), Expect = 5.783e-14
Identity = 25/79 (31.65%), Postives = 40/79 (50.63%), Query Frame = 3
Query:   84 ALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM 317
            A +E + ++ +      KRNF+E+++L I LKN D  + K R    + LP      +KV +    +    AEK G DY+
Sbjct:    2 ARKETVEAVKKALASRPKRNFSESVDLAINLKNIDMSQPKNRVDEDIILPSGLGKTIKVAVFAKGEVAVNAEKAGADYV 80          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METJA (50S ribosomal protein L1P OS=Methanocaldococcus jannaschii GN=rpl1p PE=1 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 2.777e-13
Identity = 31/104 (29.81%), Postives = 50/104 (48.08%), Query Frame = 1
Query:  391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            F+A   ++  I R +G  L   GK P  V    +++  V   K TV    +      V VGN  M +EQI  N++  +N +    +K   +++  Y+K TMGP+
Sbjct:  105 FIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPA 208          

HSP 2 Score: 43.5134 bits (101), Expect = 2.777e-13
Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 3
Query:   90 REAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            REA+   V+ ++E  K RNFT++ E    LK  D +K + R    V LPH    + K+ ++G     ++AE++GL  +  E +++
Sbjct:    3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEE 87          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METKA (50S ribosomal protein L1P OS=Methanopyrus kandleri GN=rpl1p PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.612e-13
Identity = 27/104 (25.96%), Postives = 52/104 (50.00%), Query Frame = 1
Query:  391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            F A   ++  + R+LGP L   GK    V     + + +     T + +++    +   +G  +ME EQ+ +N    +  + S L+K+W  +  +Y+K+TMGP+
Sbjct:  107 FYAQVDLMPDVGRVLGPVLGPRGKMAKPVPPNADIRALIERAHRTARVRMRDQPVIHTVIGARNMEPEQLAENAMAVLREITSELEKSWAQIDSVYVKTTMGPA 210          

HSP 2 Score: 40.817 bits (94), Expect = 3.612e-13
Identity = 24/90 (26.67%), Postives = 45/90 (50.00%), Query Frame = 3
Query:   72 LQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            +  + L E +  +V+YS     R F ET+++ + +K  D     +R    V LPH     + VC++ + +   EAE+ G   ++ E L++
Sbjct:    3 ITEEDLIEPLRKVVEYSPP---RRFLETVDMIVNVKGVDLSDPSQRIDKEVVLPHGRGKPVNVCVIAEGEMAREAEEAGATVINREKLEE 89          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METS3 (50S ribosomal protein L1P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl1p PE=3 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 1.028e-12
Identity = 28/103 (27.18%), Postives = 53/103 (51.46%), Query Frame = 1
Query:  391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGP 699
            F+A   ++  + R LGP L    K P  V     L+  +   ++TVK  +K+   + + VG+  M +E + +N++  +  L   L K    ++ +++K+TMGP
Sbjct:  105 FIAQADMMPLVGRFLGPILGPRNKMPKPVPASIKLDPLLERLQSTVKVGIKQQPAIQIIVGSQDMSDEDLAENIETVLTVLDRHLDKGRNQIKSMFIKTTMGP 207          

HSP 2 Score: 40.817 bits (94), Expect = 1.028e-12
Identity = 20/88 (22.73%), Postives = 53/88 (60.23%), Query Frame = 3
Query:   90 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG----LDYMDVEGLKK 338
            +E + ++ +  +++  RNFT+++++ + +++ D +K + RF+  V LP+    ++K+ ++ D + + +A+  G    ++  D+E L K
Sbjct:    3 QEVLEAVKEAKEQSKPRNFTQSVDMIVNIRDLDVKKPENRFNEEVTLPNGRGKEVKIGVIADGELIVQAKDAGVALVINKADLEELGK 90          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_NANEQ (50S ribosomal protein L1P OS=Nanoarchaeum equitans GN=rpl1p PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.080e-11
Identity = 37/118 (31.36%), Postives = 56/118 (47.46%), Query Frame = 1
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-----------ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            YH    ++ + +    LLG  L   GK P     Q           E+L  K+N T   V+  +KK +  GV +G   ME+E I +N    +N ++S L +   N+  +YLK TMGP+
Sbjct:   95 YHVVAQADLMPELGKSLLGRFLGIRGKMPNPKAGQILPPNLNEKMLEALREKLNNT---VRVNVKKHVTFGVPIGTEDMEDEAIAENADTVINEIISQLPQGKQNIDSVYLKLTMGPA 209          

HSP 2 Score: 37.3502 bits (85), Expect = 1.080e-11
Identity = 26/71 (36.62%), Postives = 37/71 (52.11%), Query Frame = 3
Query:  111 VQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV 323
            V+ ++E  KR FT+T EL   LKN D +K  R S  + LP     KM +  +   ++ E AEK    Y D+
Sbjct:    7 VKKAREGKKRRFTQTFELIFNLKNVDLRK-YRLSTYIVLPRGRGKKMPILAIVGPENKELAEK----YFDI 72          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_METBU (50S ribosomal protein L1P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.403e-11
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            F+A    + QI + LG  L   GK P  +T  +++   +N TK +V+ + K  L   V+VG   M+ E++ +N++  +  L   L+K   N++ +Y+ +TMG S
Sbjct:  106 FIAEVQYMAQIGKALGAILGPRGKMPVPLTPDKNVADLINSTKNSVRIRSKDKLTFHVSVGRRDMDVEKLAENIETVLGRLEHSLEKGKHNLKSVYVTTTMGNS 209          

HSP 2 Score: 32.3426 bits (72), Expect = 1.403e-11
Identity = 20/74 (27.03%), Postives = 37/74 (50.00%), Query Frame = 3
Query:  108 IVQYSKETNKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 326
            + Q  + + +R F+E++++ I LKN D  + K R    + LP+     MK+ +    +    A+  G DY+  E
Sbjct:   10 VKQLIEGSPERKFSESLDIAINLKNLDMSQPKNRVDEEIILPNGLGKTMKIAVFAKGEVGLNAKDAGCDYILTE 83          
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL1_NATPD (50S ribosomal protein L1P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.070e-11
Identity = 32/104 (30.77%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  391 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPS 702
            F+A   +++ I R LG  L   GK PT +   + +   VN  K TV+ +  +       VG   M+ + I  NV + +  L + L+K   N+  +Y+K+TMGP+
Sbjct:  104 FIAEADLMQDIGRYLGTVLGPRGKMPTPLQPDDDVVETVNRMKNTVQVRSGERRTFHTRVGAEDMDADAIADNVDVILRRLFTDLEKGPQNIDTVYVKTTMGPA 207          

HSP 2 Score: 36.5798 bits (83), Expect = 3.070e-11
Identity = 23/87 (26.44%), Postives = 43/87 (49.43%), Query Frame = 3
Query:   78 SDALREAISSIVQYSKETNKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLK 335
            +D++ +A+S  +  S E   RNF ET++L I L++ D    + R   S+ LP        + +  + +    AE +  D +D + L+
Sbjct:    2 ADSIEDAVSRAMSESPE---RNFRETVDLAINLRDLDLADPNNRVDESIVLPSGTGQDTHIVVFAEGETALRAEDVADDVLDSDDLE 85          
The following BLAST results are available for this feature:
BLAST of FC931323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL10A_ENTHI6.981e-1637.5060S ribosomal protein L10a (Fragment) OS=Entamoeba... [more]
RL1_PYRFU8.737e-1631.4850S ribosomal protein L1P OS=Pyrococcus furiosus G... [more]
RL1_METHJ3.240e-1531.7350S ribosomal protein L1P OS=Methanospirillum hung... [more]
RL1_UNCMA5.783e-1427.8850S ribosomal protein L1P OS=Uncultured methanogen... [more]
RL1_METJA2.777e-1329.8150S ribosomal protein L1P OS=Methanocaldococcus ja... [more]
RL1_METKA3.612e-1325.9650S ribosomal protein L1P OS=Methanopyrus kandleri... [more]
RL1_METS31.028e-1227.1850S ribosomal protein L1P OS=Methanobrevibacter sm... [more]
RL1_NANEQ1.080e-1131.3650S ribosomal protein L1P OS=Nanoarchaeum equitans... [more]
RL1_METBU1.403e-1130.7750S ribosomal protein L1P OS=Methanococcoides burt... [more]
RL1_NATPD3.070e-1130.7750S ribosomal protein L1P OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionC34103H06EF PostHarvP1 Citrus clementina cDNA clone C34103H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931323 ID=FC931323; Name=FC931323; organism=Citrus clementina; type=EST; length=722bp
GAGGGTTTCTTTTTCGTCTTCGAAGAAAAAAAAATCTGTAAAGGACTCCA
AGCGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCAT
CTCTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACCG
AGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGAC
AAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGAT
GAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAGA
TTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAAATTGAACAAGAA
CAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCAT
CAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAAC
AAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTC
CAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGC
TTTGCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGGAGCAGATC
TTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAA
AAACTGGTAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCCTT
CAACCGCATCTTTTAAGAAATC
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