FC931333

Overview
NameFC931333
Unique NameFC931333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:145..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 315.849 bits (808), Expect = 1.539e-85
Identity = 142/210 (67.62%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGSVFK+H  HRKG A+ R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELFVAAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC VE   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 4.477e-85
Identity = 140/210 (66.67%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGSVF++H  HRKG AR R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC +E   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 314.309 bits (804), Expect = 4.477e-85
Identity = 140/210 (66.67%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGSVF++H  HRKG AR R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC +E   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 4.477e-85
Identity = 140/210 (66.67%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGSVF++H  HRKG AR R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC +E   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 4.477e-85
Identity = 140/210 (66.67%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGSVF++H  HRKG AR R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC +E   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 314.309 bits (804), Expect = 4.477e-85
Identity = 140/210 (66.67%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGSVF++H  HRKG AR R++DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQFVYCG+KA L +GNVLP+ ++PEG +VC +E   GDRG  AR SG+YA VISHNP+   TR+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.637e-85
Identity = 144/210 (68.57%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIRAQRKG GSVF +HT  RKG  + R+LD+ ER+GYLKG + +IIHDPGRGAPLA V FR P+++  +K+LF+AAEGMYTGQFVYCG++A L +GNVLP+  +PEG +VCN+E   GDRG  AR SG+YA VI+HNPD   TR+KLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AY K++VKRNCWPKVRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 2.902e-84
Identity = 138/210 (65.71%), Postives = 176/210 (83.81%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG++ +IIHDPGRGAPLA+V FR P+R++ + ELF+AAEG++TGQF+YCG+KA L +GNVLP+ ++PEG +VC +E   GDRG  AR SG+YA VISHNP+   +R+KLPSG+KK++ S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 311.227 bits (796), Expect = 3.790e-84
Identity = 139/210 (66.19%), Postives = 176/210 (83.81%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIRAQRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG++ +IIHDPGRG PLA+V FR P+R++ + ELF+AAEG++TGQFV+CG+KA L +GNVLP+  +PEG ++C +E   GDRG  AR SG+YA VISHNP+   +R+KLPSGAKK++ S  RA++G VAGGGR +KP+LKAG AYHK++VKRNCWP+VRGVAMNPVEHP
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 1.009e-83
Identity = 144/211 (68.25%), Postives = 175/211 (82.94%), Query Frame = 1
Query:   67 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGR+IRAQRKG AGSVF +HTHHRKG  RFR+LD+ ER GY+KGV+ EIIHDPGRGAPLARV F+   +++  K+LF+A EGM+TGQFV+ G+KATL +GN+LP+  +PEG ++CNVE  +GD G  ARCSG+YA ++SHNPD   TRIKLPSG+KK V S  RAMIG VAGGGR +KP+LKAG A+HK+RVK+N WPKVRGVAMNPVEHP
Sbjct:    1 MGRIIRAQRKGKAGSVFGAHTHHRKGTPRFRALDYAERQGYVKGVVKEIIHDPGRGAPLARVVFKGLTQFKLDKQLFIAPEGMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHP 211          

HSP 2 Score: 22.3274 bits (46), Expect = 1.009e-83
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  696 HGGGNHSTLA-CSTVRRD 746
            HGGGNH  +   +T +RD
Sbjct:  212 HGGGNHQHVGHATTTKRD 229          
The following BLAST results are available for this feature:
BLAST of FC931333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_XENTR1.539e-8567.6260S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_RAT4.477e-8566.6760S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB4.477e-8566.6760S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE4.477e-8566.6760S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_HUMAN4.477e-8566.6760S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_BOVIN4.477e-8566.6760S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_AEDAL7.637e-8568.5760S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_DANRE2.902e-8465.7160S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_ICTPU3.790e-8466.1960S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_DICDI1.009e-8368.2560S ribosomal protein L8 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC34104A04EF PostHarvP1 Citrus clementina cDNA clone C34104A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931333 ID=FC931333; Name=FC931333; organism=Citrus clementina; type=EST; length=751bp
GAGTCCCAGCCGCACTTGTCAAAAACCCCAAAACCCTAGACAGAGAGTCA
CAGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCGTAAGGGAG
CGGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCCCGGCCAGG
TTCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAGGGAGTCAT
AACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCA
CGTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGTTCGTGGCG
GCTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGGAAGGCGAC
TTTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCTGAAGGAGCGG
TGGTTTGTAATGTGGAGCATCACGTGGGTGATCGCGGTGTCTTTGCCAGA
TGTTCGGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACAC
TACTAGGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGT
GCCGTGCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCA
TTGTTGAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTG
CTGGCCCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCATGG
TGGTGGTAACCACAGCACATTGGCATGCAGTACGGTTCGCCGTGATGCAC
C
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