FC931333

Overview
NameFC931333
Unique NameFC931333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:145..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.761e-81
Identity = 137/210 (65.24%), Postives = 171/210 (81.43%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGR IR QRKGAG +FKSH  HRKG ++ R LD+ ER+GY+KG++ +IIHDPGRGAPLA + FR P++Y+  K   VAAEGM+TGQF++CG KA + +GN++P+ ++PEG  +CNVE+  GDRGV AR SG+YA VI+HNPD   TRI+LPSGAKK+V S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHP
Sbjct:    1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.141e-80
Identity = 133/210 (63.33%), Postives = 174/210 (82.86%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GV+ +I+HD GRGAPLA+V FR P++Y+ ++E+F+A EG++TGQF+Y G+KA+L VGNVLPL S+PEG +V NVE   GDRG  AR SG+Y ++I HNPD + TR++LPSGAKKI+ S  R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HP
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 298.13 bits (762), Expect = 3.320e-80
Identity = 131/210 (62.38%), Postives = 173/210 (82.38%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++G++ +I+HD GRGAPLA+V FR P++Y+ ++E+F+A EG++TGQF+Y G+KA+L VGNVLPL S+PEG +V NVE   GDRG  AR SG+Y ++I HNPD + TR++LPSGAKK++ S  R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HP
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 4.337e-80
Identity = 134/210 (63.81%), Postives = 168/210 (80.00%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIRAQRK +G +F++HT  RKG A+ R+LDF ER+GY++GV+ +IIHDPGRGAPLA+V FR+P+ Y+   E FVA EGMYTGQFVYCG+ A L VGNVLP+  +PEG ++ NVE   GDRG   R SG+Y +++ H+ D   TR+KLPSGAKK+VPS  R ++G VAGGGR +KPLLKAG A+HK+RVKRNCWP+ RGVAMNPV+HP
Sbjct:    1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHP 209          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.661e-80
Identity = 134/210 (63.81%), Postives = 171/210 (81.43%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GV+ +I+HD GRGAPLA+V FR P++Y+ ++E F+A EG++TGQF+Y G+ A+L VGN+LPL S+PEG +V NVE   GDRG  AR SG+Y +VI HNPD + TRI+LPSGAKKIV S  R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HP
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHP 210          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 99/211 (46.92%), Postives = 131/211 (62.09%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G + +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLPL  IPEG  V N+E   GD G   R  G YA VISH  D   T +KLPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHP 204          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.839e-46
Identity = 98/211 (46.45%), Postives = 131/211 (62.09%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G + +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLPL  IPEG  V N+E   GD G   R  G YA VISH  D   T ++LPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHP 204          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.137e-46
Identity = 97/211 (45.97%), Postives = 131/211 (62.09%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G + +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLPL  IPEG  V N+E   GD G   R  G YA V+SH  D   T +KLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHP 204          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.127e-46
Identity = 96/211 (45.50%), Postives = 131/211 (62.09%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ + +Q +G G+  ++S +H RKG  ++RS D  E++G + G + +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLPL  IPEG  V N+E   GD G   R  G YA V+SH  D   T +KLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHP 204          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.192e-45
Identity = 99/211 (46.92%), Postives = 128/211 (60.66%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ I  QR G G+  F+S +H R GPA++  L        +KG I +++HDPGR  PLA++       +     L  A EGMY GQ +  G  A +  GN+LP+  IPEG  + N+E   GD G F R SG YA+++        T+++LPSG    VP+  RA IG +AGGGR EKPLLKAGNAYHK++VK   WPKVRGVAMN V HP
Sbjct:    1 MGKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTF-----LTPAVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIVGRA--GTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHP 201          
The following BLAST results are available for this feature:
BLAST of FC931333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_CAEEL1.761e-8165.2460S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL2_CANGA1.141e-8063.3360S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST3.320e-8062.3860S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_SCHPO4.337e-8063.8160S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL2_ASHGO9.661e-8063.8160S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_METM56.320e-4746.9250S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP1.839e-4646.4550S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM73.137e-4645.9750S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM69.127e-4645.5050S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_STAMF1.192e-4546.9250S ribosomal protein L2P OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionC34104A04EF PostHarvP1 Citrus clementina cDNA clone C34104A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931333 ID=FC931333; Name=FC931333; organism=Citrus clementina; type=EST; length=751bp
GAGTCCCAGCCGCACTTGTCAAAAACCCCAAAACCCTAGACAGAGAGTCA
CAGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCGTAAGGGAG
CGGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCCCGGCCAGG
TTCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAGGGAGTCAT
AACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCA
CGTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGTTCGTGGCG
GCTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGGAAGGCGAC
TTTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCTGAAGGAGCGG
TGGTTTGTAATGTGGAGCATCACGTGGGTGATCGCGGTGTCTTTGCCAGA
TGTTCGGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACAC
TACTAGGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGT
GCCGTGCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCA
TTGTTGAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTG
CTGGCCCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCATGG
TGGTGGTAACCACAGCACATTGGCATGCAGTACGGTTCGCCGTGATGCAC
C
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