FC931333

Overview
NameFC931333
Unique NameFC931333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:145..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_PORG3 (50S ribosomal protein L2 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 59/184 (32.07%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  148 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPM 699
            ++R +DF      +   +  I +DP R + +A + +         K   +A +G+  G  V  G +A   VGN LPL +IP G ++ N+E   G      R +G +A + S   +     IK+PSG  + + S C+A IG V   G ++  L K+G A     + R   P  RGV MNPV+HPM
Sbjct:   61 KYRFIDFKRTKDGIPATVKTIEYDPNRSSRIALLYYA-----DGAKAYIIAPDGLEVGHTVMSGSEAAPEVGNALPLANIPVGTIIHNIELRPGQGAKMVRSAGSFAQLTSR--EGTYVVIKMPSGEVRRILSTCKATIGSV---GNSDHALEKSGKAGRSRWLGRR--PHNRGVVMNPVDHPM 232          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_PARDP (50S ribosomal protein L2 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 62/195 (31.79%), Postives = 92/195 (47.18%), Query Frame = 1
Query:  124 THHRKGPAR---FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAA-EGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            T  RKG      +R +DF      +   +  I +DP R A +A +      +Y+  ++ ++ A + +  G  V  G K  +  GN +P   +P G +V NVE   G  G  AR +G YA  +    D    +I+L SG  ++V   C A IG V+    + +   KAG   HK        P VRGVAMNP++HP
Sbjct:   50 TMRRKGGGAKRLYRIVDFKRTKFDVSATVERIEYDPNRTAFIALI------KYEDGEQAYILAPQRLAVGDKVIAGAKVDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQIARSAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATIGAVSNSDHSNQNFGKAGRNRHK-----GIRPSVRGVAMNPIDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_PARD8 (50S ribosomal protein L2 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 58/184 (31.52%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  148 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPM 699
            ++R +DF      +   +  I +DP R + +A + +         K   +A  G+  GQ V  G  A   VGN LP+ +IP G ++ N+E   G      R +G +A + S   +     IK+PSG  + + + C+A IG V   G ++  L K+G A     + R   P+ RGV MNPV+HPM
Sbjct:   61 KYRIIDFKRNKDGIPATVKSIEYDPNRSSRIALLYYA-----DGAKSYIIAPNGLEVGQTVVSGSDAAPEVGNTLPMANIPVGTIIHNIELRPGQGAKMVRSAGAFAQLTS--KEGAYAIIKMPSGETRKILAACKATIGAV---GNSDHALEKSGKAGRSRWLGRR--PRNRGVVMNPVDHPM 232          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_OCHA4 (50S ribosomal protein L2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 62/183 (33.88%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  151 FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAA-EGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            +R +DF  R   + G +  + +DP R A +A +      RY+  +  ++ A + +  G  V  G    +  GN +PL S+P G +V NVE   G  G  AR +G YA ++    D     ++L SG +++VP  C A +G V+          KAG +   +R KR   P VRGVAMNPV+HP
Sbjct:   62 YRFIDFKRRKLDVVGTVERLEYDPNRTAFIALI------RYEDGELAYILAPQRLAVGDKVVAGNSVDVKPGNAMPLASMPVGTIVHNVELKPGKGGQIARSAGTYAQLVGR--DQGMAILRLNSGEQRLVPGACFASVGAVSNPDHGNINDGKAGRSV--WRGKR---PHVRGVAMNPVDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 66/198 (33.33%), Postives = 92/198 (46.46%), Query Frame = 1
Query:  124 THHRKGPAR---FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 696
            T  R+G      +R +DF      +   +  I +DP R A +A + ++       +K   +   G+  G  +  G ++    GN LPL  IP G  V NVE   G  G   R +G  A V++   + D   +KLPSG  +++   C A IGQV   G T+   L AG A       RN W    PKVRG  MNPV+HP
Sbjct:   50 TSRRRGGGHKQLYRIIDFKRDKHNIPAKVAAIEYDPNRNARIALLYYQ-----DGEKRYILHPNGLKVGTIIISGPESPFEDGNALPLSRIPLGTSVHNVEMTPGKGGQIVRAAGASAQVVA--KEGDYVTLKLPSGEVRLIRRDCYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 56/183 (30.60%), Postives = 92/183 (50.27%), Query Frame = 1
Query:  151 FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAA-EGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            +R++DF      +  ++  + +DP R A +A +      +YQ  ++ ++ A + +  G  V  G    +  GNV+PL ++P G +V NVE  +G  G  AR +G YA ++    D+D   ++L SG +++V   CR  IG V+        + KAG      R   N     RGV MNP++HP
Sbjct:   62 YRNVDFKRGKEDVPAIVERLEYDPNRTAFIALI------KYQDGEQAYILAPQRLAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DHDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAGRTRWMGRRPHN-----RGVVMNPIDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_MARMS (50S ribosomal protein L2 OS=Marinomonas sp. (strain MWYL1) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 58/182 (31.87%), Postives = 91/182 (50.00%), Query Frame = 1
Query:  151 FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            +R +DF      +  V+  + +DP R A +A + +        ++   +A++GM  G  V+ G  A +  GN LPL++IP G+ V  VE   G     AR +G  A +++      T R++  SG  + V + CRA +G+V+    + + L KAG         R   P VRG AMNPV+HP
Sbjct:   62 YRMVDFRRNKDGISAVVERLEYDPNRSANIALIRYA-----DGERRYIIASKGMVAGNIVFSGADAPIKAGNTLPLQNIPVGSTVHCVELKPGKGAQVARSAGASAQLVAREGRYVTLRLR--SGEMRKVLTECRATLGEVSNSEHSLRVLGKAGATRW-----RGVRPTVRGAAMNPVDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_LEPIN (50S ribosomal protein L2 OS=Leptospira interrogans GN=rplB PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 60/204 (29.41%), Postives = 96/204 (47.06%), Query Frame = 1
Query:   91 RKGAGSVFKSHTHHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            + G G   K    H+ G  +  +R +DF  R   +  V+  + +DP R A ++ + ++       +    +A +G+  G  V  G  + + +GN +P+  IP G  V NVE  +G  G  AR +G +  +     D +   +KLPS   + V   C A IG  +        + KAG +  ++  KR   P VRGV MNPV+HP
Sbjct:   40 KAGRGDGGKIAVRHKGGRVKRKYRIIDFKRRKANIPAVVKSLEYDPNRSAFISLICYK-----DGEYSYILAPDGIKVGDTVQSGAGSEIKIGNAMPIGKIPPGTNVHNVELQIGKGGQIARTAGSFGTIAGR--DGEYILLKLPSSEVRKVHENCYATIGICSNKDHNLVSIGKAGRS--RWLGKR---PSVRGVVMNPVDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_LEPIC (50S ribosomal protein L2 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 60/204 (29.41%), Postives = 96/204 (47.06%), Query Frame = 1
Query:   91 RKGAGSVFKSHTHHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            + G G   K    H+ G  +  +R +DF  R   +  V+  + +DP R A ++ + ++       +    +A +G+  G  V  G  + + +GN +P+  IP G  V NVE  +G  G  AR +G +  +     D +   +KLPS   + V   C A IG  +        + KAG +  ++  KR   P VRGV MNPV+HP
Sbjct:   40 KAGRGDGGKIAVRHKGGRVKRKYRIIDFKRRKANIPAVVKSLEYDPNRSAFISLICYK-----DGEYSYILAPDGIKVGDTVQSGAGSEIKIGNAMPIGKIPPGTNVHNVELQIGKGGQIARTAGSFGTIAGR--DGEYILLKLPSSEVRKVHENCYATIGICSNKDHNLVSIGKAGRS--RWLGKR---PSVRGVVMNPVDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_CYAP4 (50S ribosomal protein L2 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 66/211 (31.28%), Postives = 95/211 (45.02%), Query Frame = 1
Query:   76 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 696
            VI ++R+G G        H++    +R +DF      + G +  + +DP R A ++ V +        +K   +    +  G  +  G  A + VGN LPL  IP G  V NVE   G  G   R +G  A V++   + D   +KLPSG  ++    C A IGQ+         + KAG         RN W    PKVRG  MNPV+HP
Sbjct:   48 VITSRRRGGG--------HKR---LYREIDFRRNKLSVPGTVLTVEYDPNRNARISLVQYE-----DGEKRYILHPRNLAVGAVIAAGPDAAIEVGNALPLSKIPLGTGVHNVEITPGRGGQMVRAAGAMAQVVA--KEGDMVTLKLPSGEVRLFRKECYATIGQIGNVDVNNISIGKAG---------RNRWKGRRPKVRGSVMNPVDHP 231          
The following BLAST results are available for this feature:
BLAST of FC931333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PORG31.373e-1732.0750S ribosomal protein L2 OS=Porphyromonas gingival... [more]
RL2_PARDP1.373e-1731.7950S ribosomal protein L2 OS=Paracoccus denitrifica... [more]
RL2_PARD81.373e-1731.5250S ribosomal protein L2 OS=Parabacteroides distas... [more]
RL2_OCHA41.373e-1733.8850S ribosomal protein L2 OS=Ochrobactrum anthropi ... [more]
RL2_NOSP71.373e-1733.3350S ribosomal protein L2 OS=Nostoc punctiforme (st... [more]
RL2_NITHX1.373e-1730.6050S ribosomal protein L2 OS=Nitrobacter hamburgens... [more]
RL2_MARMS1.373e-1731.8750S ribosomal protein L2 OS=Marinomonas sp. (strai... [more]
RL2_LEPIN1.373e-1729.4150S ribosomal protein L2 OS=Leptospira interrogans... [more]
RL2_LEPIC1.373e-1729.4150S ribosomal protein L2 OS=Leptospira interrogans... [more]
RL2_CYAP41.373e-1731.2850S ribosomal protein L2 OS=Cyanothece sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34104A04EF PostHarvP1 Citrus clementina cDNA clone C34104A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931333 ID=FC931333; Name=FC931333; organism=Citrus clementina; type=EST; length=751bp
GAGTCCCAGCCGCACTTGTCAAAAACCCCAAAACCCTAGACAGAGAGTCA
CAGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCGTAAGGGAG
CGGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCCCGGCCAGG
TTCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAGGGAGTCAT
AACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCA
CGTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGTTCGTGGCG
GCTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGGAAGGCGAC
TTTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCTGAAGGAGCGG
TGGTTTGTAATGTGGAGCATCACGTGGGTGATCGCGGTGTCTTTGCCAGA
TGTTCGGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACAC
TACTAGGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGT
GCCGTGCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCA
TTGTTGAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTG
CTGGCCCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCATGG
TGGTGGTAACCACAGCACATTGGCATGCAGTACGGTTCGCCGTGATGCAC
C
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