FC931333

Overview
NameFC931333
Unique NameFC931333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:145..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.730e-40
Identity = 95/212 (44.81%), Postives = 126/212 (59.43%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ +  QR+G GS +++S       PAR+  L        L+G + E++HDPGR  PLA +        ++  E ++ AAEGMY GQ +  G  A  V GN+LP+  IPEG  V N+E   GD G   R  G YA+++  +   + T I+LPSG  K VP+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+VRGVAMN V HP
Sbjct:    1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLT----PVTLRGRVVELVHDPGRWVPLAHIVL------ENGDEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHP 200          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.844e-39
Identity = 89/211 (42.18%), Postives = 126/211 (59.72%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ +  QR+G G+  F++ +H  +G  R+  L+  +    L G + EI+HDPGR AP+ARV F +       ++L +A EG+  G+ +  G  A + +GN LPL  IPEG+ V ++E   GD G + R  G YA+V+S   + D   ++LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HP
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKT-LVGKVVEILHDPGRTAPVARVKFENGM-----EKLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHP 203          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.714e-39
Identity = 94/212 (44.34%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   67 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGE-RNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ +  QR+G  GSVF++    R GPAR+   +  E +N  L GV+ +++H+PGRGAPLA V F         K   +  EG+  GQ +Y G KA  V+G+++ + ++PEG +V N+E   GD G  AR SG YA+V++H+  N  T I+LPS   K V S  RA IG VA GGR EKP+LKAG  +H  R K   +P VRG AM+   HP
Sbjct:    1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFE-----DGTKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHP 205          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 91/211 (43.13%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   67 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ I  QR+G  GS F+S +  R+GP R+  L    R     G + +IIH PG  AP+A++   +   +     L  AAEG+Y GQ +  G  A+   GNV+ L   PEG +V NVE   GD G FAR  G YAVV+   P+ + T ++LPSG    V +  RA +G VAGGGR EKP++KAG  Y++ R K   +P VRG AM+P  HP
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAGR-----GYVVDIIHVPGLNAPVAKIRLENGLEF-----LNYAAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHP 201          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.407e-38
Identity = 84/212 (39.62%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ + +Q +G G+  +++ +H  K   R   +D    N  L+G + +I HDP R AP+A+V F      ++ +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CN+E    D G F R SG YA V++H P    T + +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK + +   +P+V  VAMNP +HP
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENTSLQGEVIDIEHDPARSAPIAKVAF------ENGEELFLLASEGVAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNIESKPNDGGKFVRSSGVYATVVTHEPTR--TAVSMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHP 201          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.407e-38
Identity = 82/211 (38.86%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ I +Q +G G+  +++ +H  K   R   +D    N  ++G +  + HDP R AP+A+V F        ++ L +A+EG+  G  + CG  A +  GN++P+  +PEG  +CN+E    D G F R SG YA V++H  +++ T + +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK + +   +P+V GVAMNPV+HP
Sbjct:    1 MGKRIISQNRGRGTPTYRAPSHKYKAELRHPRVD---ENTSIQGKVINLEHDPARSAPIAKVVFE-----TGEERLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHP 201          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.407e-38
Identity = 91/212 (42.92%), Postives = 124/212 (58.49%), Query Frame = 1
Query:   67 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ I  QR G  GS F+S +  R  P R+      +    ++G+I E++H  G  AP   V        ++ +E+++ A EG+Y G+ +  G  A +  GNV+P+  IPEG +VCN+E  VGD G +AR SG Y VV+ H   + TT ++LPSG    V S  RA IG VAGGGR EKP +KAGN YH+ R K   +PKVRG AM+   HP
Sbjct:    1 MGKKILVQRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVL------ENGEEMYLPAVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHP 204          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.744e-37
Identity = 83/212 (39.15%), Postives = 125/212 (58.96%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ + +Q +G G+  +++ +H  K   R   +D    N  L+G +  I HDP R AP+A+V F      ++ +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CNVE    D G F R SG YA V++H      T + +PSG  K +   CRA++G VAG GR ++P LKAG  YHK + +   +P+V  VAMNP +HP
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAF------ENGEELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTHEATR--TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHP 201          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.725e-36
Identity = 88/211 (41.71%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ +  QR G GS  F+S +  R G  R+ ++      G+L G + +I+H+PG  AP+A +   +  ++  Q     A +G+   Q +  G+ + +  GNV+ +   PEG +VCNVE + GD G +AR +G YAVV+  +   D   IKLPS   K V +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HP
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHP 199          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.725e-36
Identity = 88/211 (41.71%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ +  QR G GS  F+S +  R G  R+ ++      G+L G + +I+H+PG  AP+A +   +  ++  Q     A +G+   Q +  G+ + +  GNV+ +   PEG +VCNVE + GD G +AR +G YAVV+  +   D   IKLPS   K V +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HP
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHP 199          
The following BLAST results are available for this feature:
BLAST of FC931333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_HYPBU5.730e-4044.8150S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_THEON2.844e-3942.1850S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_THEPD3.714e-3944.3450S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RL2_THENV1.843e-3843.1350S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_METMA2.407e-3839.6250S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_METBF2.407e-3838.8650S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_CALMQ2.407e-3842.9250S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_METAC7.744e-3739.1550S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_SULIY1.725e-3641.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM1.725e-3641.7150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC34104A04EF PostHarvP1 Citrus clementina cDNA clone C34104A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931333 ID=FC931333; Name=FC931333; organism=Citrus clementina; type=EST; length=751bp
GAGTCCCAGCCGCACTTGTCAAAAACCCCAAAACCCTAGACAGAGAGTCA
CAGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCGTAAGGGAG
CGGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCCCGGCCAGG
TTCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAGGGAGTCAT
AACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCA
CGTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGTTCGTGGCG
GCTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGGAAGGCGAC
TTTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCTGAAGGAGCGG
TGGTTTGTAATGTGGAGCATCACGTGGGTGATCGCGGTGTCTTTGCCAGA
TGTTCGGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACAC
TACTAGGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGT
GCCGTGCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCA
TTGTTGAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTG
CTGGCCCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCATGG
TGGTGGTAACCACAGCACATTGGCATGCAGTACGGTTCGCCGTGATGCAC
C
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