FC931333

Overview
NameFC931333
Unique NameFC931333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12493 contig Ccv1_Contig12493:145..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 79/211 (37.44%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ I  QR+G GS V++S +H        + L  GE       V+ +IIH PGR +PL  +          +K   +A  G Y GQ +  G   T+  G    L +IP+G+ V N+E   GD G F R +G +A+V+SH        +KLPSG+ +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HP
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHV--VDVKHLKPGEY------VVKDIIHAPGRNSPLLELVDS-----TGKKVYQIAFTGAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHP 195          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.206e-25
Identity = 78/211 (36.97%), Postives = 106/211 (50.24%), Query Frame = 1
Query:   67 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            MG+ I  QR+G GS V++S +H        + +D G        VI +IIH PGR APL  +          +K   +A  G + GQ +  G   ++  G    L +IP+G+ V N+E   GD G F R +G +A+V+SH        +KLPSG  +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HP
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHI--TEVKHVDQGTY------VIKDIIHAPGRNAPLLEL-----MGSDGKKAYQIAFTGAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHP 195          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 72/217 (33.18%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   55 ESTQMGRVIRAQRKGAG--SVFKSHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            +S   G+V RA R  +G  SV +    H++   R+R +DF  R+ + +   +  I +DP R   +A + +R        K   +A +G+  G  +  G  A + +GN LPL +IP G +V N+E ++G  G   R +G YA++I+   D D   +KLPSG  +++   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HP
Sbjct:   32 KSLTKGKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYR-----DGDKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHP 233          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 72/217 (33.18%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   55 ESTQMGRVIRAQRKGAG--SVFKSHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            +S   G+V RA R  +G  SV +    H++   R+R +DF  R+ + +   +  I +DP R   +A + +R        K   +A +G+  G  +  G  A + +GN LPL +IP G +V N+E ++G  G   R +G YA++I+   D D   +KLPSG  +++   C A +G+V         + KAG +  ++  +R   PKVRGVAMNP++HP
Sbjct:   32 KSLTKGKVSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYR-----DGDKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMIFKKCIATLGEVGNEDYMNVSIGKAGKS--RWLGRR---PKVRGVAMNPIDHP 233          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 67/209 (32.06%), Postives = 99/209 (47.37%), Query Frame = 1
Query:   76 VIRAQRKGAGSVFKSHTHHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            VI  +  G  +  K    H+ G  +  +R +DF      +   +  I +DP R A +  + +        +K   +A EG+  GQ V  G    ++VGN LPL +IPEG  V NVE   G  G+ AR +G  A ++  + D     ++L SG  + + + CRA IG V  G  +   L KAG + H         P VRG  MNP++HP
Sbjct:   36 VILKKNSGRNNQGKITVRHQGGRVKRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYA-----DGEKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRILARCRATIGTVGNGEHSLVLLGKAGRSRH-----LGVRPTVRGSVMNPIDHP 234          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_DESAP (50S ribosomal protein L2 OS=Desulforudis audaxviator (strain MP104C) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 71/211 (33.65%), Postives = 103/211 (48.82%), Query Frame = 1
Query:   76 VIRAQRKGAGSVFKSHT--HHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHP 696
            ++   RK AG  F+      HR G  +  +R +DF      + G +  I +DP R A +A V +        +K   VA  G+  GQ +  G +A + VGN LPLR+IP G ++ N+E + G      R +G  A +++   + D   ++LPSG  ++ P  CRA IGQV         + KAG A           P VRGV MNPV+HP
Sbjct:   33 LVEPLRKKAGRNFQGRVTVRHRGGGHKRLYRVIDFKRNKDGVPGKVATIEYDPNRSANIALVNYA-----DGEKRYIVAPAGLKVGQEIMSGPQADIKVGNALPLRNIPPGVLIHNIELYPGHGARVVRSAGGSAQLMA--KEGDYAHVRLPSGEVRLFPLDCRATIGQVGNVEHENIVIGKAGRARW-----LGIRPTVRGVVMNPVDHP 231          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 75/242 (30.99%), Postives = 110/242 (45.45%), Query Frame = 1
Query:   13 HLSKTPKP*T-----ESHSESTQMGRVIRAQR---KGAGSVFKSHTHHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 696
            HL KT  P T     +S  +S     +I  Q    KG  S       HR G  +  +R +DF     Y+ G I  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LPL  +P G  + N+E  +G  G  AR +G  A +I+   +  +  +KLPSG  +++   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HP
Sbjct:    4 HLYKTSTPSTRNGAVDSQVKSNTRNNLIYGQHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYG-----DGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 229          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_AMOA5 (50S ribosomal protein L2 OS=Amoebophilus asiaticus (strain 5a2) GN=rplB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.190e-22
Identity = 69/194 (35.57%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  130 HRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPM 699
            H+K   R R +DF  R   +  V+  I +DP R A +A + +         K   +A EG+  G  V  G      VGN +PLR++P G +V N+E H G     AR +G YA +++   +     +KLPSG  ++V   C A +G V+        L KAG         RN W    P+VRGVAMNPV+HPM
Sbjct:   58 HKK---RMRIIDFKRRKYDIPAVVNSIQYDPMRTAYIALLYY-----VDGAKSYIIAPEGLKVGDRVLSGNNIAPEVGNAMPLRTMPTGTIVHNIELHPGRGAAMARSAGTYAQLLA--KEERYVTLKLPSGEMRMVLGECMATVGTVSNSEHNNIVLGKAG---------RNRWLGRRPRVRGVAMNPVDHPM 232          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 74/242 (30.58%), Postives = 110/242 (45.45%), Query Frame = 1
Query:   13 HLSKTPKP*T-----ESHSESTQMGRVIRAQR---KGAGSVFKSHTHHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHP 696
            HL KT  P T     +S  +S     +I  Q    KG  +       HR G  +  +R +DF     Y+ G I  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LPL  +P G  + N+E  +G  G  AR +G  A +I+   +  +  +KLPSG  +++   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HP
Sbjct:    4 HLYKTSTPSTRNGAVDSQVKSNTRNNLIYGQHRCSKGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYG-----DGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHP 229          
BLAST of FC931333 vs. ExPASy Swiss-Prot
Match: RL2_TREDE (50S ribosomal protein L2 OS=Treponema denticola GN=rplB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 77/222 (34.68%), Postives = 112/222 (50.45%), Query Frame = 1
Query:   55 ESTQMGRVIRAQRKGAG--SVFKSHTHHRKGPARFRSLDFGERNGY-LKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPM 699
            +S   G+  RA R   G  SV      H++   ++R +DF +RN Y + G +  I +DP R A +A +     F    +K   +A +G+  GQ +  G  ATL V N LPL +IP G  V N+E  +G  G  AR +G  A+V +   + +   I+LPSG  ++V   C A IG+V         L KAG         R+ W    P VRG+AMNP++HP+
Sbjct:   31 KSLTTGKKNRAGRDSRGRISVRGQGGGHKQ---KYRQIDF-KRNKYGIPGTVRTIEYDPNRSANIALI-----FYADGEKRYIIAPKGLKIGQKIMSGEMATLDVANALPLEAIPVGFTVHNIELTIGRGGQMARSAGAGALVAA--KEGEYVTIRLPSGETRLVNKKCYATIGEVGNEDHMNTSLGKAG---------RSRWLGIRPTVRGMAMNPIDHPL 232          
The following BLAST results are available for this feature:
BLAST of FC931333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_THEVO1.049e-2537.4450S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_THEAC5.206e-2536.9750S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_BORRA9.819e-2433.1850S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL9.819e-2433.1850S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_MYCAP5.388e-2232.0650S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_DESAP5.388e-2233.6550S ribosomal protein L2 OS=Desulforudis audaxviat... [more]
RK2_POPTR5.388e-2230.9950S ribosomal protein L2, chloroplastic OS=Populus... [more]
RL2_AMOA59.190e-2235.5750S ribosomal protein L2 OS=Amoebophilus asiaticus... [more]
RK2B_POPAL1.200e-2130.5850S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RL2_TREDE1.568e-2134.6850S ribosomal protein L2 OS=Treponema denticola GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104A04EF PostHarvP1 Citrus clementina cDNA clone C34104A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931333 ID=FC931333; Name=FC931333; organism=Citrus clementina; type=EST; length=751bp
GAGTCCCAGCCGCACTTGTCAAAAACCCCAAAACCCTAGACAGAGAGTCA
CAGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCGTAAGGGAG
CGGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCCCGGCCAGG
TTCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAGGGAGTCAT
AACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCA
CGTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGTTCGTGGCG
GCTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGGAAGGCGAC
TTTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCTGAAGGAGCGG
TGGTTTGTAATGTGGAGCATCACGTGGGTGATCGCGGTGTCTTTGCCAGA
TGTTCGGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACAC
TACTAGGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGT
GCCGTGCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCA
TTGTTGAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTG
CTGGCCCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCATGG
TGGTGGTAACCACAGCACATTGGCATGCAGTACGGTTCGCCGTGATGCAC
C
back to top