FC931336

Overview
NameFC931336
Unique NameFC931336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5490 contig Ccv1_Contig5490:491..1136. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 58/152 (38.16%), Postives = 79/152 (51.97%), Query Frame = 2
Query:   89 PAPLLSGLRCSIRLIMTA----RRLTPMISVLTLTIATLLFWASFSGASDKSAEAAFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDE-RDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLLGIA 529
            P P +S    S  LI       R L    SV  +T ++    AS S +S  S     + KTV+ + +VI+SK +C YC   K++FK L + P VVELD+    G  +Q  L  + G+ TVP VF+ GKHIGG  DTV+    G L  +L  A
Sbjct:   18 PIPSVSCSSYSFSLIYVGSPYKRCLKQSCSVRAMTSSSSA--ASSSSSSFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  242 AFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            A  ++ VS + + +FSK YCP+C   K +  +L      VELD   DG  IQ AL E  G+RTVP VF+  KHIGG D T   +  GKL  LL
Sbjct:    4 AKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLL 96          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 34/87 (39.08%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  260 VSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            +  ++++IFSK+YCP+    K +F  L +  +++ELD+ DDG ++Q+ L E+  ++TVP +F+N  H+GG D T +A+++G L +LL
Sbjct:  117 IEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLL 203          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  248 VEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPH----VVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            V+  ++ ++I + SK YCPYC  A +   E    P     V++L++  +G +IQ AL E+ G+RTVP +++NGKHIGG+DD  E  E+G+L +LL
Sbjct:   10 VKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 104          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/100 (34.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  230 SAEAAFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLLGIA 529
            S+  +FV+  V+ + +V+F+K+YCPYC   + V  +  +   V ++D  ++G  IQ  L +  G+RTVP +F++ KH+GG+ D    ++ G+L  L   A
Sbjct:    2 SSVESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSLFNTA 101          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.733e-12
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  230 SAEAAFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            S   AFVEK +S++ + +FSK++CP+C+ AK+   + +      ELD+ ++G +IQ  L E   + TVP +F   + IGG+ D  +   SG L +++
Sbjct:    3 SIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: YZ73_CAEEL (Uncharacterized monothiol glutaredoxin F10D7.3 OS=Caenorhabditis elegans GN=F10D7.3 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 38/128 (29.69%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  158 MISVLTLTIATLLFWASFSGASDKSAEAAF------VEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGP-HVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            M+ +LT+ +A +      +  S K  +         +   V +HK++++SK YCP+ +  K++     +    +VELD  +    +Q+ L +  GR TVP++F++GK +GG D+T    E G+L  LL
Sbjct:    1 MLRILTVVLALVTIATVHAELSKKKEDKTLKDLEDKIVNDVMTHKVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILKKYSGRTTVPQLFISGKFVGGHDETKAIEEKGELRPLL 128          
BLAST of FC931336 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  242 AFVEKTVSSHKIVIFSKAYCPYCRMAKSVFKELNMGPHVVELDERDDGWNIQDALGEMVGRRTVPRVFMNGKHIGGSDDTVEAYESGKLAQLL 520
            A ++  +  H +VIFS++ C  C   K +FK L +   V+ELD+ +DG  ++  L E+     +P VF+  + IGG   T++AY+ G+L +LL
Sbjct:   57 ALLQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEGTLSELAAETDLPVVFVKQRKIGGHGPTLKAYQEGRLQKLL 149          
The following BLAST results are available for this feature:
BLAST of FC931336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRXC5_ARATH2.583e-1638.16Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GLRX_SOLLC7.516e-1645.16Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
TRXR3_MOUSE2.187e-1539.08Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GLRX1_YEAST1.418e-1442.11Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GLRX1_SCHPO7.035e-1434.00Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX2_SCHPO1.733e-1235.05Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
YZ73_CAEEL5.042e-1229.69Uncharacterized monothiol glutaredoxin F10D7.3 OS=... [more]
TRXR1_HUMAN6.585e-1235.48Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC34104A07EF PostHarvP1 Citrus clementina cDNA clone C34104A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931336 ID=FC931336; Name=FC931336; organism=Citrus clementina; type=EST; length=646bp
GATACACAAGAGTATAAAAGTCTCTTATAAAGTGAATTTGTGCGCTAATA
TGCATTTACGGAATATATGTGGAAAACCAACTCCGCTGCCTGCACCTCTT
CTGAGCGGTCTCCGGTGCAGCATCAGACTCATCATGACGGCGAGGAGACT
AACACCAATGATCTCAGTACTAACGTTAACGATTGCGACGCTTCTCTTCT
GGGCATCATTTTCCGGAGCTTCTGACAAATCTGCAGAAGCTGCTTTTGTC
GAAAAGACTGTCTCTTCCCACAAGATCGTCATCTTCTCCAAGGCTTATTG
CCCATATTGTAGGATGGCTAAATCTGTATTCAAAGAGTTGAACATGGGTC
CTCATGTAGTCGAGCTTGATGAGAGAGATGATGGCTGGAACATTCAGGAT
GCCTTGGGTGAGATGGTTGGGCGGCGCACTGTACCACGGGTGTTCATGAA
TGGAAAGCACATTGGAGGCTCAGATGATACTGTTGAAGCTTATGAAAGTG
GGAAACTAGCTCAGCTTTTAGGTATTGCAGCAAGCGGCCCAGATGATCTC
TAATTGCTTCGAGATCAATGCCAATTGGCGATCTGTCTAAAGCTTTGATG
CACTACTCTGAAGAACGAGGATGATCTCTGAGGCCATAATAGGATT
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