FC931337

Overview
NameFC931337
Unique NameFC931337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15311 contig Ccv1_Contig15311:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_XENTR (Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=vps24 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.173e-34
Identity = 72/170 (42.35%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V S+K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM++ SKEM KAG+IEE + D  +   D           +D++L  I      + P
Sbjct:   12 PKDLVNEWSLKIRKEMRLIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEITAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_DICDI (Charged multivesicular body protein 3 OS=Dictyostelium discoideum GN=chmp3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32
Identity = 64/141 (45.39%), Postives = 97/141 (68.79%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD 635
            KP P++L++ W+R+LR+E R ++ Q+R I  +EK   + IK+  K  D  SAK+LA+E+V SRK   R+Y  KAQMNS+SM L  ++A+ +  G+L KS E+MK++N+L+K PE+   M     EMTKAG++EE ++D  D
Sbjct:    7 KPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD 147          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS24_SCHPO (Vacuolar protein sorting-associated protein 24 OS=Schizosaccharomyces pombe GN=vps24 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 46/133 (34.59%), Postives = 88/133 (66.17%), Query Frame = 3
Query:  216 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE 614
            P PQ+  R WQ  +R+E R ++RQ+  ++   K  +  +K  AK++D+++ + LA+E+ R+ +   RL E+KA + S+S+ L + +A+ +  G +  S ++M+ V++L++ P+++ TM+  S E+TKAGV+EE
Sbjct:   11 PTPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEE 143          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS24_YEAST (Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae GN=VPS24 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 47/144 (32.64%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  216 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALD 647
            P+P++  R  +  LR+  RNIE+ +R++   +   Q+ IK +AK+ND+ + +  A+EL +  K  +R+Y ++AQ++S+ M + E++ +      +  SA +M+ VN+L++ P++  TM E  KE+ K+G+I E V+D +++  D
Sbjct:   11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGD 154          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 54/178 (30.34%), Postives = 95/178 (53.37%), Query Frame = 3
Query:  195 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            MN+   KPNP+++LR+ +R++ Q  R IE++I  +Q EEK +   IK  AK  +  + K LA++L+R R+ +  L  ++AQM  I+ H     A       +  + + M  ++  M   + A  M+EF K+  +  +  E ++D++D ALD+           ++VL  I  + A+QL
Sbjct:    1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQL 178          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 50/178 (28.09%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  195 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            M +   +  P+++LR+ QR L +  R I+R+   +Q +EK +   IK  AK+  M+SAK +A++LVR+R  + + YE K Q+ ++S+ +    +       +    + M  +N  M  P+    M EF ++  K  + EE +ND +D  ++           +++VL  I  + A+QL
Sbjct:    1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQL 178          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 52/173 (30.06%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  192 VMNMIKPK-PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS-AEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGI 704
            +MN I  K   P +LLR+ +R L +  R IER+ + +Q +EK +   IK  AK+  M + K +A++L+R+R  + + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF ++  K  ++ E + DA+D AL+           V +VL  I
Sbjct:    1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEI 172          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  195 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            MN+ K K  P+  LR  +R++    R IER+I  +Q EEK +   IK  AK  + ++ K LA++LVR R+ +  L  ++AQ+  ++ H     A       +  + + M  +N  M   + A  +++F K+  +  +  E +++A+D  LD            ++VL  I    A+QL
Sbjct:    1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 178          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            K     ++++  R+LR   R I R    ++++E+ ++  IK  AK  +  + K LA++LV+ RK  NR Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++
Sbjct:    7 KKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            K     +++D  ++L+ + R I R    ++++EK ++  IK  AK  +  + K LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++
Sbjct:    7 KKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178          
The following BLAST results are available for this feature:
BLAST of FC931337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHMP3_XENTR1.173e-3442.35Charged multivesicular body protein 3 OS=Xenopus t... [more]
CHMP3_DICDI5.447e-3245.39Charged multivesicular body protein 3 OS=Dictyoste... [more]
VPS24_SCHPO1.259e-2034.59Vacuolar protein sorting-associated protein 24 OS=... [more]
VPS24_YEAST1.066e-1932.64Vacuolar protein-sorting-associated protein 24 OS=... [more]
VPS2C_ARATH1.818e-1930.34Vacuolar protein sorting-associated protein 2 homo... [more]
CM2A2_DICDI2.222e-1728.09Charged multivesicular body protein 2a homolog 2 O... [more]
VPS2A_ARATH8.443e-1730.06Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2B_ARATH7.148e-1628.09Vacuolar protein sorting-associated protein 2 homo... [more]
CHM2B_CHICK7.903e-1527.91Charged multivesicular body protein 2b OS=Gallus g... [more]
CH2BA_XENLA1.348e-1427.33Charged multivesicular body protein 2b-A OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionC34104A08EF PostHarvP1 Citrus clementina cDNA clone C34104A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931337 ID=FC931337; Name=FC931337; organism=Citrus clementina; type=EST; length=733bp
GGACCAGGCGTCCAGCGATCGACTGTTGCTGGACCTCAGAAAAATAAAAA
TTCAGAAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGAT
CGGTTGCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGA
AAAAAATAATAGAGATAAAAAAAGCTAAGGAAATGGAAAAAGTTATGAAC
ATGATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACG
TAAGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATAC
AGAGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGA
AACGACATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAG
AAAGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATAT
CGATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTG
AACAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACC
AGAAGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTG
GAGTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCG
GAGGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGG
CATTGCTGGTGAGACTGCAGCACAGCTGCCTGA
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