FC931337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_XENTR (Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=vps24 PE=2 SV=3) HSP 1 Score: 146.747 bits (369), Expect = 1.173e-34 Identity = 72/170 (42.35%), Postives = 109/170 (64.12%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P+ L+ +W K+R+E R I+RQIRDIQRE++ V+++IK++AK+ + + LA+E+V S+K VN+LY +KA MNS+ M + +A+ R G L KS EVMK + NL+K PE+ ATM++ SKEM KAG+IEE + D + D +D++L I + P Sbjct: 12 PKDLVNEWSLKIRKEMRLIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEITAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_DICDI (Charged multivesicular body protein 3 OS=Dictyostelium discoideum GN=chmp3 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32 Identity = 64/141 (45.39%), Postives = 97/141 (68.79%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVD 635 KP P++L++ W+R+LR+E R ++ Q+R I +EK + IK+ K D SAK+LA+E+V SRK R+Y KAQMNS+SM L ++A+ + G+L KS E+MK++N+L+K PE+ M EMTKAG++EE ++D D Sbjct: 7 KPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD 147
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS24_SCHPO (Vacuolar protein sorting-associated protein 24 OS=Schizosaccharomyces pombe GN=vps24 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20 Identity = 46/133 (34.59%), Postives = 88/133 (66.17%), Query Frame = 3 Query: 216 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE 614 P PQ+ R WQ +R+E R ++RQ+ ++ K + +K AK++D+++ + LA+E+ R+ + RL E+KA + S+S+ L + +A+ + G + S ++M+ V++L++ P+++ TM+ S E+TKAGV+EE Sbjct: 11 PTPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEE 143
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS24_YEAST (Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae GN=VPS24 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19 Identity = 47/144 (32.64%), Postives = 91/144 (63.19%), Query Frame = 3 Query: 216 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALD 647 P+P++ R + LR+ RNIE+ +R++ + Q+ IK +AK+ND+ + + A+EL + K +R+Y ++AQ++S+ M + E++ + + SA +M+ VN+L++ P++ TM E KE+ K+G+I E V+D +++ D Sbjct: 11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGD 154
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19 Identity = 54/178 (30.34%), Postives = 95/178 (53.37%), Query Frame = 3 Query: 195 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 MN+ KPNP+++LR+ +R++ Q R IE++I +Q EEK + IK AK + + K LA++L+R R+ + L ++AQM I+ H A + + + M ++ M + A M+EF K+ + + E ++D++D ALD+ ++VL I + A+QL Sbjct: 1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQL 178
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17 Identity = 50/178 (28.09%), Postives = 92/178 (51.69%), Query Frame = 3 Query: 195 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 M + + P+++LR+ QR L + R I+R+ +Q +EK + IK AK+ M+SAK +A++LVR+R + + YE K Q+ ++S+ + + + + M +N M P+ M EF ++ K + EE +ND +D ++ +++VL I + A+QL Sbjct: 1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQL 178
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17 Identity = 52/173 (30.06%), Postives = 93/173 (53.76%), Query Frame = 3 Query: 192 VMNMIKPK-PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS-AEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGI 704 +MN I K P +LLR+ +R L + R IER+ + +Q +EK + IK AK+ M + K +A++L+R+R + + Y+ K+Q+ +S+ + +++ + +G K + M +N M P + MQEF ++ K ++ E + DA+D AL+ V +VL I Sbjct: 1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEI 172
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16 Identity = 50/178 (28.09%), Postives = 88/178 (49.44%), Query Frame = 3 Query: 195 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 MN+ K K P+ LR +R++ R IER+I +Q EEK + IK AK + ++ K LA++LVR R+ + L ++AQ+ ++ H A + + + M +N M + A +++F K+ + + E +++A+D LD ++VL I A+QL Sbjct: 1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 178
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15 Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 K ++++ R+LR R I R ++++E+ ++ IK AK + + K LA++LV+ RK NR Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++VL I E + ++ Sbjct: 7 KKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKM 178
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14 Identity = 47/172 (27.33%), Postives = 86/172 (50.00%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 K +++D ++L+ + R I R ++++EK ++ IK AK + + K LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++VL I E + ++ Sbjct: 7 KKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178 The following BLAST results are available for this feature:
BLAST of FC931337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931337 ID=FC931337; Name=FC931337; organism=Citrus clementina; type=EST; length=733bpback to top |