FC931337

Overview
NameFC931337
Unique NameFC931337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15311 contig Ccv1_Contig15311:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 43/161 (26.71%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695
            +  P++LLR  QR L +  R ++R+ + ++++EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVL 168          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 47/172 (27.33%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            K     ++R+  ++LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++
Sbjct:    7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 42/161 (26.09%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695
            +  P+++LR  QR L +  R ++R+ + ++++EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVL 168          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 41/161 (25.47%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695
            +  P+++LR  QR L +  R+++R+ + ++++EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVL 168          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 46/166 (27.71%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + K +A++LVR+R+ V +    +A + ++S+ +       S+A+A     +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVL 168          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTAL-DSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            PQ+ L+  QR L +  R +ER+ R ++ ++K +   IK +AK   +++AK  A++LVR+R  + +    KAQ+ +IS+ +    +  +    ++++  ++  +N  M  P++     EF K+    G  +EF+++A+D  + D           V+KVL  I  +  +QL
Sbjct:   14 PQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 46/172 (26.74%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            K     ++R+  ++LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + +E +ND +D   D+          V++VL  I  E + ++
Sbjct:    7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 45/168 (26.79%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVL 168          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 45/168 (26.79%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  M + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVL 168          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + K LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++VL  I  E + ++
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKM 178          
The following BLAST results are available for this feature:
BLAST of FC931337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHM2A_XENLA1.761e-1426.71Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2B_XENTR3.922e-1427.33Charged multivesicular body protein 2b OS=Xenopus ... [more]
CHM2A_XENTR3.922e-1426.09Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_DANRE6.690e-1425.47Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2A_CHICK6.690e-1427.71Charged multivesicular body protein 2a OS=Gallus g... [more]
DID4_YEAST8.737e-1427.06DOA4-independent degradation protein 4 OS=Saccharo... [more]
CH2BB_XENLA8.737e-1426.74Charged multivesicular body protein 2b-B OS=Xenopu... [more]
CHM2A_MOUSE1.947e-1326.79Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_HUMAN1.947e-1326.79Charged multivesicular body protein 2a OS=Homo sap... [more]
CHM2B_PONAB5.663e-1327.33Charged multivesicular body protein 2b OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank descriptionC34104A08EF PostHarvP1 Citrus clementina cDNA clone C34104A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931337 ID=FC931337; Name=FC931337; organism=Citrus clementina; type=EST; length=733bp
GGACCAGGCGTCCAGCGATCGACTGTTGCTGGACCTCAGAAAAATAAAAA
TTCAGAAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGAT
CGGTTGCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGA
AAAAAATAATAGAGATAAAAAAAGCTAAGGAAATGGAAAAAGTTATGAAC
ATGATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACG
TAAGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATAC
AGAGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGA
AACGACATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAG
AAAGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATAT
CGATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTG
AACAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACC
AGAAGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTG
GAGTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCG
GAGGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGG
CATTGCTGGTGAGACTGCAGCACAGCTGCCTGA
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