FC931337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 43/161 (26.71%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695 + P++LLR QR L + R ++R+ + ++++EK + IK AK+ M + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF K+ + EE +NDA+D A+ V +VL Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVL 168
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14 Identity = 47/172 (27.33%), Postives = 85/172 (49.42%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 K ++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++VL I E + ++ Sbjct: 7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKM 178
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14 Identity = 42/161 (26.09%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695 + P+++LR QR L + R ++R+ + ++++EK + IK AK+ M + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF K+ + EE +NDA+D A+ V +VL Sbjct: 8 RKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVL 168
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14 Identity = 41/161 (25.47%), Postives = 84/161 (52.17%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695 + P+++LR QR L + R+++R+ + ++++EK + IK AK+ M + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF ++ + EE +NDA+D A+ V +VL Sbjct: 8 RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVL 168
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14 Identity = 46/166 (27.71%), Postives = 86/166 (51.81%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ M + K +A++LVR+R+ V + +A + ++S+ + S+A+A + + M +N +K P++ M EF K+ + EE +NDA+D A+ V +VL Sbjct: 8 RKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVL 168
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14 Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTAL-DSXXXXXXXXXXVDKVLTGIAGETAAQL 728 PQ+ L+ QR L + R +ER+ R ++ ++K + IK +AK +++AK A++LVR+R + + KAQ+ +IS+ + + + ++++ ++ +N M P++ EF K+ G +EF+++A+D + D V+KVL I + +QL Sbjct: 14 PQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14 Identity = 46/172 (26.74%), Postives = 85/172 (49.42%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 K ++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + +E +ND +D D+ V++VL I E + ++ Sbjct: 7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKM 178
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 45/168 (26.79%), Postives = 86/168 (51.19%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ M + + +A++LVR+R+ V + +A + ++S+ + +T+ N A+ MK +N +K P++ M EF ++ + EE +NDA+D A+ V +VL Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVL 168
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 45/168 (26.79%), Postives = 86/168 (51.19%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVL 695 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ M + + +A++LVR+R+ V + +A + ++S+ + +T+ N A+ MK +N +K P++ M EF ++ + EE +NDA+D A+ V +VL Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVL 168
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13 Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 3 Query: 213 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQL 728 K ++++ R+LR R I R ++++EK ++ IK AK + + K LA++LV RK R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D V++VL I E + ++ Sbjct: 7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKM 178 The following BLAST results are available for this feature:
BLAST of FC931337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931337 ID=FC931337; Name=FC931337; organism=Citrus clementina; type=EST; length=733bpback to top |