FC931342

Overview
NameFC931342
Unique NameFC931342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5114 contig Ccv1_Contig5114:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR Y +LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10B_DROME (40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAK 384
            M +P+ +R  I +YLF+EGV  AKKD++  KHPE++ +PNL VIK MQS  S+  V+E FAW HYYWYLTNEGIE LR Y +LP EIVP+TLK+ A+
Sbjct:    1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPAR 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_XENLA (40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.276e-27
Identity = 57/101 (56.44%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M++P+K+R  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR + +LP EIVPATL++    T
Sbjct:    1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET 101          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10B_SCHPO (40S ribosomal protein S10-B OS=Schizosaccharomyces pombe GN=rps10b PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 54/97 (55.67%), Postives = 75/97 (77.32%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            M+IP++NR+ I + LFQ+GV  AKKD+NL KHPE+ VPNLQVIK  QS  S+ Y++  + W  +Y+ LTNEG+E+LR Y +LP+E+VPAT K+Q +P
Sbjct:    1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10A_SCHPO (40S ribosomal protein S10-A OS=Schizosaccharomyces pombe GN=rps10a PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M+IP++NR+ I + LF +GV  AKKD+NL KHPE+ VPNLQVIK  QS  S+ Y++  + W  +Y+ LTNEG+E+LR Y +LP+E+VPAT K+Q +PT
Sbjct:    1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPT 98          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10_DICDI (40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 1
Query:  100 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQA 381
            +IP +N+  I +YLFQEGV  A KD++LAKHP+I+ V NL V+++++SFKS+++V ETF W +YYW LT EGI++LR Y  +P  +VPAT+KKQA
Sbjct:    3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFNWQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10L_HUMAN (Putative 40S ribosomal protein S10-like protein OS=Homo sapiens GN=RPS10P5 PE=5 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATL 369
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+  V+E FAW H+YWYLTNEG ++LR Y +LP EIVPATL
Sbjct:    1 MLMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATL 94          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10A_YEAST (40S ribosomal protein S10-A OS=Saccharomyces cerevisiae GN=RPS10A PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M++P+++R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  SK YV+  F+W +YY+ LT EG+E+LR Y NLP  IVP T  ++  PT
Sbjct:    1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPT 98          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10A_DROME (40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAK 384
            M IP+ NR  I +YLF+EGV  AKKD  + KH E+D +PNLQVIK+MQS  S+ +V+E FAW H+YW LTNEGIE LR Y +LP EIVP+TL +  +
Sbjct:    1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTR 97          
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: RS10B_YEAST (40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   97 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKPT 390
            M++P++ R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  SK YV+  F+W +YY+ LT EG+E+LR Y NLP  IVP T  ++  P+
Sbjct:    1 MLMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPS 98          
The following BLAST results are available for this feature:
BLAST of FC931342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS10_BOVIN4.772e-2858.4240S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]
RS10B_DROME4.040e-2759.7940S ribosomal protein S10b OS=Drosophila melanogas... [more]
RS10_XENLA5.276e-2756.4440S ribosomal protein S10 OS=Xenopus laevis GN=rps... [more]
RS10B_SCHPO1.535e-2655.6740S ribosomal protein S10-B OS=Schizosaccharomyces... [more]
RS10A_SCHPO1.535e-2655.1040S ribosomal protein S10-A OS=Schizosaccharomyces... [more]
RS10_DICDI5.834e-2655.7940S ribosomal protein S10 OS=Dictyostelium discoid... [more]
RS10L_HUMAN9.951e-2659.57Putative 40S ribosomal protein S10-like protein OS... [more]
RS10A_YEAST9.951e-2655.1040S ribosomal protein S10-A OS=Saccharomyces cerev... [more]
RS10A_DROME2.217e-2558.7640S ribosomal protein S10a OS=Drosophila melanogas... [more]
RS10B_YEAST3.781e-2554.0840S ribosomal protein S10-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC34104B01EF PostHarvP1 Citrus clementina cDNA clone C34104B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931342 ID=FC931342; Name=FC931342; organism=Citrus clementina; type=EST; length=731bp
GAAAGCTAGGGTTTTGGTGCTACAGAAGCGATAAGAGTGTGAGATTTGTT
CTTCCTTGCAGCCTCTTTTCTCAATCATCACCTCTTCATCGCAATCATGA
TCATTCCAGAGAAAAACCGCCGTGAGATCTCCAAGTACCTCTTCCAAGAG
GGTGTGTGCTACGCAAAGAAAGACTACAATTTGGCAAAGCACCCAGAAAT
CGATGTCCCGAATCTACAGGTGATTAAGTTGATGCAGAGCTTCAAGTCAA
AGGAGTACGTCCGCGAGACCTTTGCCTGGATGCATTATTACTGGTACCTT
ACCAATGAAGGCATTGAGTTCCTCAGAGGTTACCCCAATCTGCCTTCTGA
AATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGCCCACAGGTGGTCGTC
CTTTTGGTGGACCAGGGGGTGATCGCCCACGTGGCCCACCACGCTTCGAT
GGTGGAGAGAGAAGATTTGGTGACCGAGATGGATACCGCGGAGCTCCACG
AGGAGCAGGTGGTGATTTTGGTGACAAGGGTGGAGCTCCTGCTGACTATC
AGCCATCTTTCAGGGGCCCTGGTGGAAGGCCAGGGTTTGGTCGTGGCGGT
GGTGGTTTTGGTGCAGGGTCTGNCAGCTCAAATCTTCCTTGAGAGATGAG
TTCTGCATCTTGAGGGATTTAGGAATTTTGGTTACAGATTGCTGAGTGTA
TGGCAGTCTTTGTTTGATTGCTGCATTGTTG
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