FC931342

Overview
NameFC931342
Unique NameFC931342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: PLEC1_RAT (Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   88 IAIMIIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            +A M++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S K++  VRETFAW H+YWYLTNEGI+ LR Y +LP EIVPA+L++  +P
Sbjct:    2 VAGMLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: PLEC1_MOUSE (Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   88 IAIMIIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            +A M++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S K++  VRETFAW H+YWYLTNEGI+ LR Y +LP EIVPA+L++  +P
Sbjct:    2 VAGMLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of FC931342 vs. ExPASy Swiss-Prot
Match: PLEC1_HUMAN (Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.380e-21
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   88 IAIMIIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYPNLPSEIVPATLKKQAKP 387
            +A M++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S +++  VRETFAW H+YWYLTNEGI  LR Y +LP EIVPA+L++  +P
Sbjct:    2 VAGMLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRP 103
The following BLAST results are available for this feature:
BLAST of FC931342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PLEC1_RAT3.313e-2151.96Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2[more]
PLEC1_MOUSE3.313e-2151.96Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2[more]
PLEC1_HUMAN7.380e-2150.98Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104B01EF PostHarvP1 Citrus clementina cDNA clone C34104B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931342 ID=FC931342; Name=FC931342; organism=Citrus clementina; type=EST; length=731bp
GAAAGCTAGGGTTTTGGTGCTACAGAAGCGATAAGAGTGTGAGATTTGTT
CTTCCTTGCAGCCTCTTTTCTCAATCATCACCTCTTCATCGCAATCATGA
TCATTCCAGAGAAAAACCGCCGTGAGATCTCCAAGTACCTCTTCCAAGAG
GGTGTGTGCTACGCAAAGAAAGACTACAATTTGGCAAAGCACCCAGAAAT
CGATGTCCCGAATCTACAGGTGATTAAGTTGATGCAGAGCTTCAAGTCAA
AGGAGTACGTCCGCGAGACCTTTGCCTGGATGCATTATTACTGGTACCTT
ACCAATGAAGGCATTGAGTTCCTCAGAGGTTACCCCAATCTGCCTTCTGA
AATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGCCCACAGGTGGTCGTC
CTTTTGGTGGACCAGGGGGTGATCGCCCACGTGGCCCACCACGCTTCGAT
GGTGGAGAGAGAAGATTTGGTGACCGAGATGGATACCGCGGAGCTCCACG
AGGAGCAGGTGGTGATTTTGGTGACAAGGGTGGAGCTCCTGCTGACTATC
AGCCATCTTTCAGGGGCCCTGGTGGAAGGCCAGGGTTTGGTCGTGGCGGT
GGTGGTTTTGGTGCAGGGTCTGNCAGCTCAAATCTTCCTTGAGAGATGAG
TTCTGCATCTTGAGGGATTTAGGAATTTTGGTTACAGATTGCTGAGTGTA
TGGCAGTCTTTGTTTGATTGCTGCATTGTTG
back to top