FC931346

Overview
NameFC931346
Unique NameFC931346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_CAMJR (Phosphoenolpyruvate carboxykinase [ATP] OS=Campylobacter jejuni (strain RM1221) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.185e-41
Identity = 95/209 (45.45%), Postives = 123/209 (58.85%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R V+  A+ + F+ NM IRP+ EELE+F   DF +YNA +     Y    + S   +  N+     VI GT Y GEMKKG+FS+M+Y +P    LS+H   N+G+  DVA               D  R LIGDDEH W D GV N EGGCYAK I+L+ E EP+I+ AIK   +LEN+V     + VDY D S TENTR +YPIE+I
Sbjct:  116 VRFVTEIAWQAHFVKNMFIRPSQEELENFKA-DFIVYNACKCINEDYKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANVGEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLNPEHEPEIYGAIKRNALLENVVL-RADKSVDYADASKTENTRVSYPIEHI 322          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_BACSK (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus clausii (strain KSM-K16) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.185e-41
Identity = 87/201 (43.28%), Postives = 120/201 (59.70%), Query Frame = 1
Query:   25 AYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            A+H LF   + IR  +    + G   FTI +A  F  +       S   + I+  ++ ++I GT+YAGEMKK +FS+M+YL+P+  +L +H   N   +G+ A                 +R LIGDDEH WS+ G+ NIEGGCYAKCI LS+E EP IW+AI FG VLEN+V D +T + D+    +TENTRAAYP+E I
Sbjct:  128 AWHHLFARQLFIREQAPS--NNGLEPFTIISAPTFKADPSVDGTRSEAFVIISFEQRIILIGGTEYAGEMKKAIFSVMNYLLPEAGVLPMHCSANTTDEGETALFFGLSGTGKTTLSASEHRRLIGDDEHGWSEKGIFNIEGGCYAKCIGLSKESEPQIWDAIAFGAVLENVVVDPNTGKPDFKSGELTENTRAAYPLEAI 326          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_AGRVS (Phosphoenolpyruvate carboxykinase [ATP] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.185e-41
Identity = 91/208 (43.75%), Postives = 123/208 (59.13%), Query Frame = 1
Query:    7 RIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            R+V+  A+HSLF+ N+ IRP    L DF    FTI +   F  +   H   + T I  +     ++I GT YAGEMKK +F+ ++Y++P +Q++ +H   N+G  GD A               D  R LIGDDEH W ++G+ N EGGCYAK I LS E EP+I+   K FGTVLEN+V DE+ R  D+ D S TENTR AYP+ +I
Sbjct:  125 RVVTELAWHSLFIRNLLIRPERAALADFEAK-FTIIDLPSFKADPARHGCRTETVIACDFTNNIVLIAGTYYAGEMKKSVFTALNYMLPAKQVMPMHCSANVGPAGDSAVFFGLSGTGKTTLSADPARTLIGDDEHGWGEDGIFNFEGGCYAKTIRLSAEAEPEIYATTKRFGTVLENVVLDEN-RVPDFNDGSKTENTRCAYPLNFI 330          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_ECOSM (Phosphoenolpyruvate carboxykinase [ATP] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.854e-41
Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R ++  A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  +  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+   +LEN+   E    +D+ D S TENTR +YPI +I
Sbjct:  135 VRFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGSIDFDDGSKTENTRVSYPIYHI 341          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_ECO7I (Phosphoenolpyruvate carboxykinase [ATP] OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.854e-41
Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R ++  A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  +  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+   +LEN+   E    +D+ D S TENTR +YPI +I
Sbjct:  135 VRFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGSIDFDDGSKTENTRVSYPIYHI 341          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_CAMJJ (Phosphoenolpyruvate carboxykinase [ATP] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.854e-41
Identity = 95/209 (45.45%), Postives = 122/209 (58.37%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R V+  A+ + F+ NM IRP+ EELE+F   DF +YNA +     Y    + S   +  N+     VI GT Y GEMKKG+FS+M+Y +P    LS+H   N+G+  DVA               D  R LIGDDEH W D GV N EGGCYAK I+L  E EP+I+ AIK   +LEN+V     + VDY D S TENTR +YPIE+I
Sbjct:  116 VRFVTEIAWQAHFVKNMFIRPSQEELENFKA-DFIVYNACKCINEDYKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANVGEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPEHEPEIYGAIKRNALLENVVL-RADKSVDYADASKTENTRVSYPIEHI 322          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_CAMJE (Phosphoenolpyruvate carboxykinase [ATP] OS=Campylobacter jejuni GN=pckA PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.854e-41
Identity = 95/209 (45.45%), Postives = 122/209 (58.37%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R V+  A+ + F+ NM IRP+ EELE+F   DF +YNA +     Y    + S   +  N+     VI GT Y GEMKKG+FS+M+Y +P    LS+H   N+G+  DVA               D  R LIGDDEH W D GV N EGGCYAK I+L  E EP+I+ AIK   +LEN+V     + VDY D S TENTR +YPIE+I
Sbjct:  116 VRFVTEIAWQAHFVKNMFIRPSQEELENFKA-DFIVYNACKCINEDYKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANVGEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPEHEPEIYGAIKRNALLENVVL-RADKSVDYADASKTENTRVSYPIEHI 322          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_CAMJ8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=pckA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.854e-41
Identity = 95/209 (45.45%), Postives = 122/209 (58.37%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R V+  A+ + F+ NM IRP+ EELE+F   DF +YNA +     Y    + S   +  N+     VI GT Y GEMKKG+FS+M+Y +P    LS+H   N+G+  DVA               D  R LIGDDEH W D GV N EGGCYAK I+L  E EP+I+ AIK   +LEN+V     + VDY D S TENTR +YPIE+I
Sbjct:  116 VRFVTEIAWQAHFVKNMFIRPSQEELENFKA-DFIVYNACKCINEDYKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANVGEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPEHEPEIYGAIKRNALLENVVL-RADKSVDYADASKTENTRVSYPIEHI 322          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_THET8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pckA PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.727e-41
Identity = 91/213 (42.72%), Postives = 130/213 (61.03%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRP----TSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R+V+   +H+LF  NM I P      +E+E F  P FT+ +A  F          S   + I+  R+ ++I+GT+YAGE+KK +F++M+YLMPKR +  +H+  N+GK+GDVA               D  R LIGDDEH WS++GV N EGGCYAK I LS E EP I+ A  +F  +LEN+V +  +R V + D S TENTR++YPI ++
Sbjct:  116 VRVVTESPWHALFARNMFILPRRFGNDDEVEAF-VPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSGTGKTTLSTDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTRSSYPIAHL 327          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_SHISS (Phosphoenolpyruvate carboxykinase [ATP] OS=Shigella sonnei (strain Ss046) GN=pckA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.727e-41
Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R ++  A+ + F+ NM IRP+ EEL  F  PDF + N  +    ++    + S   +  NL  +  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS+E EP+I+NAI+   +LEN+   E    +D+ D S TENTR +YPI +I
Sbjct:  135 VRFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVRE-DGTIDFDDGSKTENTRVSYPIYHI 341          
The following BLAST results are available for this feature:
BLAST of FC931346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_CAMJR2.185e-4145.45Phosphoenolpyruvate carboxykinase [ATP] OS=Campylo... [more]
PCKA_BACSK2.185e-4143.28Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillu... [more]
PCKA_AGRVS2.185e-4143.75Phosphoenolpyruvate carboxykinase [ATP] OS=Agrobac... [more]
PCKA_ECOSM2.854e-4143.54Phosphoenolpyruvate carboxykinase [ATP] OS=Escheri... [more]
PCKA_ECO7I2.854e-4143.54Phosphoenolpyruvate carboxykinase [ATP] OS=Escheri... [more]
PCKA_CAMJJ2.854e-4145.45Phosphoenolpyruvate carboxykinase [ATP] OS=Campylo... [more]
PCKA_CAMJE2.854e-4145.45Phosphoenolpyruvate carboxykinase [ATP] OS=Campylo... [more]
PCKA_CAMJ82.854e-4145.45Phosphoenolpyruvate carboxykinase [ATP] OS=Campylo... [more]
PCKA_THET83.727e-4142.72Phosphoenolpyruvate carboxykinase [ATP] OS=Thermus... [more]
PCKA_SHISS3.727e-4143.54Phosphoenolpyruvate carboxykinase [ATP] OS=Shigell... [more]

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Properties
Property NameValue
Genbank descriptionC34104B05EF PostHarvP1 Citrus clementina cDNA clone C34104B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931346 ID=FC931346; Name=FC931346; organism=Citrus clementina; type=EST; length=628bp
AAACTCCGAATTGTTTCTGCCAGAGCTTACCATTCCTTGTTCATGCACAA
CATGTGCATCCGACCCACGTCAGAAGAATTAGAAGATTTTGGTACTCCGG
ACTTCACAATATACAATGCTGGGCAGTTTCCTTGCAACCGTTACACCCAC
TATATGACTTCCTCTACTAGCATTGACATAAATCTTGCTAGGAAAGAAAT
GGTCATTCTTGGCACCCAGTATGCCGGAGAAATGAAGAAAGGTCTATTCA
GCTTAATGCATTACCTAATGCCTAAACGTCAAATCCTCTCCCTCCACTCT
GGCTGCAATATGGGAAAAGATGGGGATGTTGCCCTTTTCTTCGGACTATC
CGGTACTGGGAAGACAACTCTGTCTACTGATCATAACCGGTACTTAATTG
GAGATGATGAGCACTGCTGGAGTGATAATGGAGTATCAAACATTGAAGGC
GGGTGCTATGCCAAATGCATTGATCTTTCAAGGGAGAAGGAGCCTGATAT
CTGGAATGCCATCAAATTCGGGACTGTGCTAGAAAACATTGTGTTTGATG
AGCATACACGAGAAGTGGACTACTTGGACAAATCTGTCACGGAGAACACT
CGTGCCGCGTATCCCATAGAGTATATCC
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