FC931346

Overview
NameFC931346
Unique NameFC931346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_EDWI9 (Phosphoenolpyruvate carboxykinase [ATP] OS=Edwardsiella ictaluri (strain 93-146) GN=pckA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 90/210 (42.86%), Postives = 122/210 (58.10%), Query Frame = 1
Query:    1 KLRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRY-THYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            K+R ++  A+ + F+ NM IRP ++EL  F  PDF + N  +    ++    + S   +  NL  +  +I GT Y GEMKKG+FS+M+YL+P + I S+H   N+G+ GDVA               D  R LIGDDEH W D+GV N EGGCYAK I LS + EPDI+ AI    +LEN+        VD+ D S TENTR +YPI +I
Sbjct:  133 KVRFITEVAWQAHFVKNMFIRPEADELAGF-EPDFIVMNGAKCTNPQWQAQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSIMNYLLPLKGIASMHCSANVGEQGDVAIFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSADAEPDIYGAITRDALLENVTV-RADGSVDFDDGSKTENTRVSYPIYHI 340          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_MARMM (Phosphoenolpyruvate carboxykinase [ATP] OS=Maricaulis maris (strain MCS10) GN=pckA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.772e-39
Identity = 87/210 (41.43%), Postives = 123/210 (58.57%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDG-DVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R+V+  A+HSLF+ ++   P +EE   F   +FTI N   F  +   H   S T I ++ AR+ ++I GT YAGE KK +F++++YL+P + ++ +H   N   +G D                 D +R L+GDDEH WS NG+ N EGGCYAK I LS E EP+I    K +GTVLEN+V D  TR +D  D S+ EN+R AYP+  I
Sbjct:  121 VRVVNELAWHSLFIRHLLRVPAAEEYAGFAA-EFTIINLPSFKADPARHGCRSETVIGVDFARRIVLIGGTSYAGETKKSVFTILNYLLPAKGVMPMHCSVNSNPNGEDATIFFGLSGTGKTTLSADASRTLVGDDEHGWSPNGLFNFEGGCYAKMIRLSAEAEPEIHATTKMWGTVLENVVMDPQTRVLDLDDDSLAENSRGAYPLSAI 329          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_GRAFK (Phosphoenolpyruvate carboxykinase [ATP] OS=Gramella forsetii (strain KT0803) GN=pckA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.466e-37
Identity = 83/210 (39.52%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQ-ILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWS-DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R+++   + +LF  NM +RP ++EL++F   D+ + NA  F  N             +N ++K  +I GT Y GE+KKG+FS +++++P  +  L +H   N+G+DGD A               D  R LIGDDEH W+ +N + N EGGCYAK I+LS E EPDI+ AIK G +LEN+  D +  +VD+ D ++T+NTR +YPI +I
Sbjct:  124 IRVLNEYPWSNLFAFNMFLRPENQELDNF-KEDWLVLNAPGFKANPEVDGTRQENFAILNFSKKIALIGGTGYTGEIKKGIFSALNFVLPVYENTLPMHCSANVGEDGDTAIFFGLSGTGKTTLSADPERKLIGDDEHGWTKENTIFNFEGGCYAKVINLSEENEPDIYKAIKPGAILENVALDAN-GDVDFEDVTITQNTRVSYPINHI 331          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_BAUCH (Phosphoenolpyruvate carboxykinase [ATP] OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=pckA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.213e-35
Identity = 82/210 (39.05%), Postives = 121/210 (57.62%), Query Frame = 1
Query:    1 KLRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            ++R V+  A+ + F+ NM I+P + +L  F  P+F + N  +     +    M S   I +NL     +I GT Y GEMKKGLF++M+Y +P + I S+H   N+G + DVA               D NR LIGDDEH W ++G+ N+EGGCYAK I+L  E EP+I+ AI+   +LEN++       V+Y D S T+N R +YP+ +I
Sbjct:  132 RVRFVTEVAWQAHFVKNMFIQPDAIDLISF-EPEFIVLNGAKCTNPNWREQNMHSENFIALNLTEGMQLIAGTWYGGEMKKGLFTVMNYHLPLKGIASMHCSANVGINKDVALFFGLSGTGKTTLSHDTNRALIGDDEHGWDNDGIFNLEGGCYAKTINLKPELEPEIFQAIRCNALLENVMV-RADGSVNYHDNSKTDNARVSYPLNHI 339          
The following BLAST results are available for this feature:
BLAST of FC931346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_EDWI91.566e-3942.86Phosphoenolpyruvate carboxykinase [ATP] OS=Edwards... [more]
PCKA_MARMM7.772e-3941.43Phosphoenolpyruvate carboxykinase [ATP] OS=Maricau... [more]
PCKA_GRAFK1.466e-3739.52Phosphoenolpyruvate carboxykinase [ATP] OS=Gramell... [more]
PCKA_BAUCH5.213e-3539.05Phosphoenolpyruvate carboxykinase [ATP] OS=Baumann... [more]

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Properties
Property NameValue
Genbank descriptionC34104B05EF PostHarvP1 Citrus clementina cDNA clone C34104B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931346 ID=FC931346; Name=FC931346; organism=Citrus clementina; type=EST; length=628bp
AAACTCCGAATTGTTTCTGCCAGAGCTTACCATTCCTTGTTCATGCACAA
CATGTGCATCCGACCCACGTCAGAAGAATTAGAAGATTTTGGTACTCCGG
ACTTCACAATATACAATGCTGGGCAGTTTCCTTGCAACCGTTACACCCAC
TATATGACTTCCTCTACTAGCATTGACATAAATCTTGCTAGGAAAGAAAT
GGTCATTCTTGGCACCCAGTATGCCGGAGAAATGAAGAAAGGTCTATTCA
GCTTAATGCATTACCTAATGCCTAAACGTCAAATCCTCTCCCTCCACTCT
GGCTGCAATATGGGAAAAGATGGGGATGTTGCCCTTTTCTTCGGACTATC
CGGTACTGGGAAGACAACTCTGTCTACTGATCATAACCGGTACTTAATTG
GAGATGATGAGCACTGCTGGAGTGATAATGGAGTATCAAACATTGAAGGC
GGGTGCTATGCCAAATGCATTGATCTTTCAAGGGAGAAGGAGCCTGATAT
CTGGAATGCCATCAAATTCGGGACTGTGCTAGAAAACATTGTGTTTGATG
AGCATACACGAGAAGTGGACTACTTGGACAAATCTGTCACGGAGAACACT
CGTGCCGCGTATCCCATAGAGTATATCC
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