FC931346

Overview
NameFC931346
Unique NameFC931346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15351 contig Ccv1_Contig15351:20..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_DEIRA (Phosphoenolpyruvate carboxykinase [ATP] OS=Deinococcus radiodurans GN=pckA PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.323e-46
Identity = 98/210 (46.67%), Postives = 137/210 (65.24%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEH-TREVDYLDKSVTENTRAAYPIEYI 627
            +R+++  AYHSLF+ NM +RPT+EEL++F   ++T+ N   F  +       + T I +N ++K ++  GTQYAGE KKG+F +++YL+P + I+ +H   N+G+DGDVA               D  R LIGDDEH W+D GV N EGGCYAK I+LS E EP I+   + +GTVLEN+V DE  T ++D  D S+TENTR+AYPIE I
Sbjct:  125 VRMITEMAYHSLFIRNMFVRPTAEELQNFQA-EWTVLNIPSFKADPAVDGTRTDTFILVNFSKKMIIAGGTQYAGENKKGIFGVLNYLLPAKGIMPMHCSANVGEDGDVALFFGLSGTGKTTLSADPGRKLIGDDEHGWTDTGVFNFEGGCYAKVINLSAEAEPAIYQTTRNYGTVLENVVLDESGTPDLD--DGSLTENTRSAYPIEQI 331          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_PSEMY (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas mendocina (strain ymp) GN=pckA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.727e-46
Identity = 92/208 (44.23%), Postives = 130/208 (62.50%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +++ +A A+ +LF   + I P++      G  ++ I N   F C        S   + IN A K+++I G +YAGEMKK +FS+ ++L+P++ +L +H   N+G++GDV                D +RYLIGDDEH W +  V NIEGGCYAKCIDLS + EP IW AI+FGTVLEN+V DE  R  DY D S+T+N+RAAYP+EY+
Sbjct:  109 VKMTTATAWQNLFGRQLFINPSA--YNPAGKAEWEILNVANFECVPERDGTNSDGCVIINFAAKKVLIAGMRYAGEMKKAMFSVQNFLLPEKDVLPMHCAANIGEEGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNIEGGCYAKCIDLSEKNEPVIWKAIQFGTVLENVVLDEQ-RTPDYSDDSLTQNSRAAYPLEYV 313          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_SHESH (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella sediminis (strain HAW-EB3) GN=pckA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.946e-46
Identity = 93/208 (44.71%), Postives = 129/208 (62.02%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R+ +  A+H LF  N+ I P  E+      P + I NA  F C        S  ++ IN A +++++ G +YAGEMKK +FS+ ++L+P + +L +H   N+G  GD                 D  R+LIGDDEH W+  GV NIEGGCYAKCIDLS++ EP IWNAI+FGTVLEN+  DE+ R  DY D ++TEN+RAAYP+E+I
Sbjct:  109 VRVTTETAWHQLFARNLFIVP--EQFNAADKPIWQIMNAPGFECIPERDGTHSDATVIINFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGIKGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAPGGVFNIEGGCYAKCIDLSQKNEPVIWNAIRFGTVLENVTMDEN-RVPDYTDSTLTENSRAAYPLEHI 313          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_SHEDO (Phosphoenolpyruvate carboxykinase [ATP] OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=pckA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.026e-46
Identity = 92/208 (44.23%), Postives = 131/208 (62.98%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +R+ +  A+H LF  N+ I P      D G   + I NA  F C+       S   + +N A +++++ G +YAGEMKK +FS+ ++L+P + +L +H   N+G+DGD                 D  R+LIGDDEH W+  GV NIEGGCYAKCIDLS++ EP IW+AI+FGTVLEN++ DE+ R  +Y D S+TEN+RAAYP+E+I
Sbjct:  109 VRVTTEYAWHQLFARNLFITPEHFNRGDKGV--WQIINAPGFVCDPSRDGTHSDAVVILNFAERKVLLAGLKYAGEMKKSMFSVQNFLLPAKGVLPMHCSANVGQDGDTTLFFGLSGTGKTTLSADPKRFLIGDDEHGWAKGGVFNIEGGCYAKCIDLSQKNEPVIWDAIRFGTVLENVMLDEN-RVPNYKDSSLTENSRAAYPLEHI 313          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_BRAJA (Phosphoenolpyruvate carboxykinase [ATP] OS=Bradyrhizobium japonicum GN=pckA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.026e-46
Identity = 97/210 (46.19%), Postives = 129/210 (61.43%), Query Frame = 1
Query:    1 KLRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNA-IKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            K R+ +  A+HSLF+  + IRP + EL  F TP+ TI +   F  +   H   S   + I+ ARK ++I G+ YAGEMKK +F+ ++Y +P+R ++ +H   N+G   D A               D NR LIGDDEH W  NGV N EGGCYAKCI LS+E EP I+ A  +FG VLEN V DE TR VD+ D S TENTR+AYP+++I
Sbjct:  123 KTRVFTELAWHSLFIRTLLIRPEAIELSTF-TPELTIIDMPSFRADPKRHGCKSENVVAIDFARKIVLIGGSYYAGEMKKSVFTTLNYYLPERGVMPMHCSANVGAKDDAAIFFGLSGTGKTTLSADPNRTLIGDDEHGWGPNGVFNFEGGCYAKCIKLSQEAEPQIYAASTRFGAVLENCVLDEDTRVVDFDDGSKTENTRSAYPLDFI 331          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_AMOA5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Amoebophilus asiaticus (strain 5a2) GN=pckA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.573e-46
Identity = 90/209 (43.06%), Postives = 135/209 (64.59%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKR-QILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            LR V+ +++ +LF++N+ +RP  +EL  F +PDF I    +F  + +     ++    IN  ++ ++I GT +AGE+KK +F++++YL+P+  Q+L +H   N+G DG+ A               D NR LIGDDEH W D G+ N EGGCYAK I+L++E EP I++AIKFGT++EN+ F   TR +DY D S+TEN R AYP+EYI
Sbjct:  125 LRTVTTQSWTNLFVNNLFLRPIDKELTKF-SPDFLILQVPEFQADPHVDGTKNANFTIINFTKRVILIGGTGFAGEIKKAVFTVLNYLLPQEHQVLPMHCSANVGTDGNTAIYFGLSGTGKTTLSADPNRKLIGDDEHGWCDKGIFNFEGGCYAKTINLAKESEPQIFDAIKFGTIVENMRFFAGTRTIDYKDSSITENVRCAYPLEYI 332          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_PSEU2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.120e-45
Identity = 91/208 (43.75%), Postives = 128/208 (61.54%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +++ +  A+H+LF   + I P  E+    G  ++ I NA  F C+       S  ++ IN A ++++I G +YAGEMKK +FS+ ++L+P   +L +H   NMG++GDV                D +RYLIGDDEH W +  V NIEGGCYAKCIDLS + EP IW AI+ G VLEN+V D  T++ DY D S+T+N+RAAYP E I
Sbjct:  109 VKMTTETAWHNLFGRCLFINP--EQYNPAGKDEWEIQNAPWFVCDPERDGTNSDGTVIINFAARKVLIAGMRYAGEMKKAMFSVQNFLLPASDVLPMHCAANMGEEGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNIEGGCYAKCIDLSEKNEPVIWKAIQHGAVLENVVLDPVTKKADYADSSLTQNSRAAYPRELI 314          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_PSEA7 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas aeruginosa (strain PA7) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.120e-45
Identity = 90/208 (43.27%), Postives = 129/208 (62.02%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +++ +A A+ +LF   + I P  E+    G  ++ + N   F C        S   + +N A+K+++I G +YAGEMKK +FS+ ++L+P+R +L +H   N+G+ GDV                D +RYLIGDDEH W +  V N+EGGCYAKCIDLS + EP IW AIKFG VLEN+V DE  R  DY D S+T+N+RAAYP+E++
Sbjct:  109 VKMTTATAWQNLFGRCLFIEP--EQYNPAGKDEWQVLNVANFECVPERDGTNSDGCVILNFAQKKVLIAGMRYAGEMKKAMFSVQNFLLPERDVLPMHCAANIGEAGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNVEGGCYAKCIDLSEKNEPVIWKAIKFGAVLENVVLDEE-RVPDYADDSLTQNSRAAYPLEHV 313          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_PSE14 (Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.120e-45
Identity = 91/208 (43.75%), Postives = 128/208 (61.54%), Query Frame = 1
Query:    4 LRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDGDVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            +++ +  A+H+LF   + I P  E+    G  ++ I NA  F C+       S  ++ IN A ++++I G +YAGEMKK +FS+ ++L+P   +L +H   NMG++GDV                D +RYLIGDDEH W +  V NIEGGCYAKCIDLS + EP IW AI+ G VLEN+V D  T++ DY D S+T+N+RAAYP E I
Sbjct:  109 VKMTTETAWHNLFGRCLFINP--EQYNPAGKDEWEIQNAPWFVCDPERDGTNSDGTVIINFAARKVLIAGMRYAGEMKKAMFSVQNFLLPASDVLPMHCAANMGEEGDVTLFFGLSGTGKTTLSADESRYLIGDDEHGWGEGVVFNIEGGCYAKCIDLSEKNEPVIWKAIQHGAVLENVVLDPVTKKADYADSSLTQNSRAAYPRELI 314          
BLAST of FC931346 vs. ExPASy Swiss-Prot
Match: PCKA_PARD8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=pckA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.120e-45
Identity = 99/211 (46.92%), Postives = 128/211 (60.66%), Query Frame = 1
Query:    1 KLRIVSARAYHSLFMHNMCIRPTSEELEDFGTPDFTIYNAGQFPCNRYTHY-MTSSTSIDINLARKEMVILGTQYAGEMKKGLFSLMHYLMPKRQILSLHSGCNMGKDG-DVAXXXXXXXXXXXXXXXDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYI 627
            K+R +   A+ + F+ NM IRPT+EEL ++G PDF  +NA +   + Y    + S T+   NL  KE VIL T Y GEMKKG+FS+M+YL P R I S+H   N  K+G   A               D  R LIGDDEH W + GV N EGGCYAK I+L +E EPDI+NAIK   +LEN+      + +D+ DKSVTENTR +YPI +I
Sbjct:  127 KVRFIMEVAWQAHFVTNMFIRPTAEELANYGEPDFVSFNAAKAKVDNYKELGLNSETATVFNLKTKEQVILNTWYGGEMKKGIFSIMNYLNPLRGIASMHCSANTDKEGKSSAIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDNEGVFNYEGGCYAKVINLDKESEPDIYNAIKRDALLENVTVAADGK-IDFADKSVTENTRVSYPIYHI 336          
The following BLAST results are available for this feature:
BLAST of FC931346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_DEIRA1.323e-4646.67Phosphoenolpyruvate carboxykinase [ATP] OS=Deinoco... [more]
PCKA_PSEMY1.727e-4644.23Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_SHESH2.946e-4644.71Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_SHEDO5.026e-4644.23Phosphoenolpyruvate carboxykinase [ATP] OS=Shewane... [more]
PCKA_BRAJA5.026e-4646.19Phosphoenolpyruvate carboxykinase [ATP] OS=Bradyrh... [more]
PCKA_AMOA58.573e-4643.06Phosphoenolpyruvate carboxykinase [ATP] OS=Amoebop... [more]
PCKA_PSEU21.120e-4543.75Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PSEA71.120e-4543.27Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PSE141.120e-4543.75Phosphoenolpyruvate carboxykinase [ATP] OS=Pseudom... [more]
PCKA_PARD81.120e-4546.92Phosphoenolpyruvate carboxykinase [ATP] OS=Parabac... [more]

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Properties
Property NameValue
Genbank descriptionC34104B05EF PostHarvP1 Citrus clementina cDNA clone C34104B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931346 ID=FC931346; Name=FC931346; organism=Citrus clementina; type=EST; length=628bp
AAACTCCGAATTGTTTCTGCCAGAGCTTACCATTCCTTGTTCATGCACAA
CATGTGCATCCGACCCACGTCAGAAGAATTAGAAGATTTTGGTACTCCGG
ACTTCACAATATACAATGCTGGGCAGTTTCCTTGCAACCGTTACACCCAC
TATATGACTTCCTCTACTAGCATTGACATAAATCTTGCTAGGAAAGAAAT
GGTCATTCTTGGCACCCAGTATGCCGGAGAAATGAAGAAAGGTCTATTCA
GCTTAATGCATTACCTAATGCCTAAACGTCAAATCCTCTCCCTCCACTCT
GGCTGCAATATGGGAAAAGATGGGGATGTTGCCCTTTTCTTCGGACTATC
CGGTACTGGGAAGACAACTCTGTCTACTGATCATAACCGGTACTTAATTG
GAGATGATGAGCACTGCTGGAGTGATAATGGAGTATCAAACATTGAAGGC
GGGTGCTATGCCAAATGCATTGATCTTTCAAGGGAGAAGGAGCCTGATAT
CTGGAATGCCATCAAATTCGGGACTGTGCTAGAAAACATTGTGTTTGATG
AGCATACACGAGAAGTGGACTACTTGGACAAATCTGTCACGGAGAACACT
CGTGCCGCGTATCCCATAGAGTATATCC
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