FC931349

Overview
NameFC931349
Unique NameFC931349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 55/158 (34.81%), Postives = 91/158 (57.59%), Query Frame = 2
Query:   29 DFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            D EK  + + +   L+ Q+  L+   + + +AE  A           I +IV+ WTGI V ++  D+   ++++ + L +RVIGQ  A+  +S  I  AR G+ +P +P+  F+  GP+GVGK+E A A+A   +G E+ +I ++MSE+ E HTVS L
Sbjct:  520 DEEKRQQYQQQLAQLEEQL-LLIRSAQPLVQAEVNA---------TVIANIVADWTGIQVGQMLKDDIRAVMELPQRLEERVIGQPHALVQLSENIMTARAGMADPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNLITINMSEYQESHTVSSL 667          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPA_ECOLI (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli (strain K12) GN=clpA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  155 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            V   DI+ +V+    IP + VS  + D L  + + L   V GQD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERHTVS+L
Sbjct:  421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERHTVSRL 533          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPA_ECOL6 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O6 GN=clpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  155 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            V   DI+ +V+    IP + VS  + D L  + + L   V GQD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERHTVS+L
Sbjct:  421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERHTVSRL 533          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.526e-20
Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  155 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            V   DI+ +V+    IP + VS  + D L  + + L   V GQD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERHTVS+L
Sbjct:  421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERHTVSRL 533          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_RAT (Caseinolytic peptidase B protein homolog OS=Rattus norvegicus GN=Clpb PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.916e-13
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  227 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERHTVSK 499
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH V+K
Sbjct:  302 EERRRFPLEQRLEQHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAK 392          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_MOUSE (Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  227 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERHTVSK 499
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH V+K
Sbjct:  302 EERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAK 392          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_HUMAN (Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  227 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERHTVSK 499
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH V+K
Sbjct:  332 EERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAK 422          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_BOVIN (Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.727e-13
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  227 ESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY-YFGSEEAMIRLDMSEFMERHTVSK 499
            E  R   +E+ L + +IGQ+ A+  +  AIRR   G  +   P+  F+F G +G+GK+ELAK  A Y +  +++  IRLDMSEF ERH V+K
Sbjct:  302 EERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLV-FLFLGSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAK 392          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: ADPR_RHOER (ATP-dependent protease ATP-binding subunit-like protein OS=Rhodococcus erythropolis PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  245 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 487
            ++ + L  +++GQ  AV A+ RAI  A VG  +P RP+A+ +  GPTGVGK+EL + +AA      + + R+DM+   + H
Sbjct:   35 RLSKALSSKIVGQQAAVDAVVRAISIAHVGATDPTRPLANILLVGPTGVGKTELVRRVAAELRSGPDDLCRIDMNALAQEH 115          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: AMIB_PSEAE (ATP-dependent protease ATP-binding subunit-like protein amiB OS=Pseudomonas aeruginosa GN=amiB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  254 ETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            + L   V+GQD A++A+   ++  R  + +P RP+ S +F GPTGVGK+E+ +ALA    G  E   R+DM+   + H  + L
Sbjct:   55 DCLRAEVLGQDPALQAVEDMLKVVRADIADPRRPLFSALFLGPTGVGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAAAL 137          
The following BLAST results are available for this feature:
BLAST of FC931349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_YEREN6.526e-2034.81Chaperone protein clpB OS=Yersinia enterocolitica ... [more]
CLPA_ECOLI6.526e-2043.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECOL66.526e-2043.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECO576.526e-2043.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_RAT5.916e-1342.39Caseinolytic peptidase B protein homolog OS=Rattus... [more]
CLPB_MOUSE7.727e-1342.39Caseinolytic peptidase B protein homolog OS=Mus mu... [more]
CLPB_HUMAN7.727e-1342.39Caseinolytic peptidase B protein homolog OS=Homo s... [more]
CLPB_BOVIN7.727e-1342.39Caseinolytic peptidase B protein homolog OS=Bos ta... [more]
ADPR_RHOER1.903e-1138.27ATP-dependent protease ATP-binding subunit-like pr... [more]
AMIB_PSEAE4.240e-1137.35ATP-dependent protease ATP-binding subunit-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC34104B08EF PostHarvP1 Citrus clementina cDNA clone C34104B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931349 ID=FC931349; Name=FC931349; organism=Citrus clementina; type=EST; length=502bp
GGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGT
TACGTGATAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGAT
AAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCC
TGTTGTGACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCA
TTCCGGTTGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATG
GAAGAGACCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGC
TATTAGTCGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATC
GACCAATTGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCT
GAACTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTTTCCAAGC
TC
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