FC931349

Overview
NameFC931349
Unique NameFC931349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:499..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 3.680e-39
Identity = 79/160 (49.38%), Postives = 114/160 (71.25%), Query Frame = 2
Query:   35 EKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV----VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E+A  + D     + Q   + +  K+++ A    G    +    VTE+++  +++ WTGIPV ++   E D+LL+ME+ LH+RVIGQDEAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H+VS+L
Sbjct:  487 EQARRVGDLARMSELQYGTIPELEKQLAAATALEGKTMKLLRNRVTEIEVAEVLARWTGIPVSRMLKSERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALATFLFDSDDAMVRIDMSEFMEKHSVSRL 646          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.806e-39
Identity = 85/168 (50.60%), Postives = 120/168 (71.43%), Query Frame = 2
Query:   14 AVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAG-DVGPVVTEV----DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            A R  +F++AGEL             + +  KE+++AE++ G    P+V EV    +I HIVS WTGIPV+K+   E D+LL+ME+ L K V+GQ +AV+A+SRA+RR+R GL++PNRPI SFIF GPTGVGK+EL KALA + F  E A++R+DMSE+ME+H+V++L
Sbjct:  490 AQRKGEFQRAGELA---------YGVIPNLEKELAEAESQDGASANPMVQEVVTPDNIAHIVSRWTGIPVDKMLEGERDKLLRMEDELAKWVVGQGDAVQAVSRAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETALMRIDMSEYMEKHSVARL 648          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 8.198e-39
Identity = 87/167 (52.10%), Postives = 111/167 (66.47%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            +KNEA + +DFEKA   RD+           + K +E+ K E    D+ PV+TE DI+ IV   T IPV  +   E  +L+ + + L   VIGQDEAV  IS+AIRR+RVGL  PNRPI SF+F GPTGVGK+ELAK LA   FGS E+MIR DMSE+ME+H+V+KL
Sbjct:  368 KKNEATKAEDFEKAAHFRDQ-----------ISKLRELQKQEVTDEDM-PVITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKISKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKL 522          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.198e-39
Identity = 88/171 (51.46%), Postives = 118/171 (69.01%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGEL---RDREMDLK-AQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E   A R  +F+KAGEL   R  E++ + A I A  + G+ M +A          VT   I  +VS WTG+PV+K+   E D+LLKME++L KRV+GQ EAV A++ A+RR+R GL++PNRP+ SF+F GPTGVGK+EL KALA Y F  E AM+RLDMSE+ME+H+VS+L
Sbjct:  487 ELANAQRRGEFQKAGELAYGRIPELERQLADIEAKENSGEMMEEA----------VTANHIAQVVSRWTGVPVDKMLEGEKDKLLKMEDSLGKRVVGQAEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYMEKHSVSRL 647          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.198e-39
Identity = 85/173 (49.13%), Postives = 118/173 (68.21%), Query Frame = 2
Query:   11 EAVRGQDFEKAGEL---------RDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            +A R  D  KA +L         RDRE   +A++  L  +G  + + +         VTE DI  IV+ WTGIPV ++   E  +LL++E  LH+RVIGQ EAV+A+S AIRRAR G+K+PNRPI SF+F GPTGVGK+ELA+ALA + F +++A++RLDMSE+ME+H+VS+L
Sbjct:  493 QAERAYDLNKAAQLKYGKLEGVQRDREAK-EAKLLELQSQGSTLLREQ---------VTEADIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGMKDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVRLDMSEYMEKHSVSRL 655          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.398e-38
Identity = 85/166 (51.20%), Postives = 115/166 (69.28%), Query Frame = 2
Query:   11 EAVRGQDFEKAGELRDREMD-LKAQISALVD-KGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            +A R  D  K  E++  ++  L+ Q++A    + K M     +       VT+ +I  I++ WTGIPV ++   E D+LL+ME+ LHKRVIGQDEAV AIS AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H VS+L
Sbjct:  488 QARRSGDLAKMSEIQYGKIPGLEKQLAAATQAESKHMKLLRNK-------VTDAEIADILARWTGIPVARMLESEKDKLLRMEQELHKRVIGQDEAVNAISNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFLFDSDDAMVRIDMSEFMEKHAVSRL 646          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.398e-38
Identity = 87/169 (51.48%), Postives = 116/169 (68.64%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELR-DREMDLKAQIS-ALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  +A R  D  K  EL+  R  DL+ Q+  A   +GKEM+            VT+ +I  ++S  TGIPV K+   E ++LL+ME+ LHKRVIGQ+EAV A++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H+VS+L
Sbjct:  485 ELEQARRAGDLAKMSELQYGRIPDLEKQLEQAETSEGKEMTLLRYR-------VTDEEIAEVLSKATGIPVSKMMEGEKEKLLRMEDELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEKHSVSRL 646          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.385e-38
Identity = 85/175 (48.57%), Postives = 116/175 (66.29%), Query Frame = 2
Query:    5 KNEAVRGQDFEKAG----ELRDREMDLKAQISALVDKGKEMSKAETEAGD-----VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            K + +RG+  E A     +++ R  +L+A+I           + + E GD     +   VTE +I  +VS WTG+PV ++   E  +LL MEE LH+RV+GQDEAV A+S A+RR+R GL++PNRPI SF+F GPTGVGK+EL KALA   F  E AM+R+DMSEFMERH+VS+L
Sbjct:  495 KEKQLRGESPEDAYSEMLQVQSRLRELQARIDEAEKHDDSADQTKEEPGDEKRRLLRKEVTEEEIAEVVSTWTGVPVTRMMETERAKLLVMEERLHQRVVGQDEAVTAVSDAVRRSRSGLQDPNRPIGSFLFLGPTGVGKTELCKALAEVMFDDESAMVRIDMSEFMERHSVSRL 669          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.385e-38
Identity = 86/172 (50.00%), Postives = 118/172 (68.60%), Query Frame = 2
Query:   11 EAVRGQDFEKA-----GELRDREMDLKAQISALVD---KGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            +A R  D+EKA     GEL   + D++ + S L++    G  + + +         VTE DI  IV+ WTGIP+ ++   E  +LL++E  LH+RVIGQ EAV A+S AIRRAR G+K+P+RPI SF+F GPTGVGK+ELA+ALA + F SEEAM+R+DMSE+ME+H VS+L
Sbjct:  499 KAERATDWEKAAKIKYGELEVLQHDIEEKESKLLEIQGSGNTLLREQ---------VTESDIAEIVAGWTGIPMNRLMETERQKLLQLEGHLHQRVIGQKEAVAAVSAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAGFLFDSEEAMVRIDMSEYMEKHAVSRL 661          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.069e-38
Identity = 88/171 (51.46%), Postives = 112/171 (65.50%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKA-ETEAGDVGPV---VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E   A R QD+ K  E+         Q   L    K+M  A E E  D   V   VT  +I  +VS WTGIPV K+   E D+LL+ME+ LH+RV+GQ+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S EAMIR+DMSEFME+H+VS+L
Sbjct:  485 ELEAAQRRQDYAKMSEI---------QYGVLPQLEKQMLLANEVEHHDFKLVQDRVTAEEIAEVVSRWTGIPVNKMLEGERDKLLRMEDELHRRVVGQEEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVSRL 646          
The following BLAST results are available for this feature:
BLAST of FC931349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_YERPE3.680e-3949.38Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_RHIME4.806e-3950.60Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPE_LACLM8.198e-3952.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_BRAJA8.198e-3951.46Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB1_ANASP8.198e-3949.13Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_PHOLL1.398e-3851.20Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_HAEIN1.398e-3851.48Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_RHOBA2.385e-3848.57Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB1_SYNY32.385e-3850.00Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_XANCP4.069e-3851.46Chaperone protein clpB OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionC34104B08EF PostHarvP1 Citrus clementina cDNA clone C34104B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931349 ID=FC931349; Name=FC931349; organism=Citrus clementina; type=EST; length=502bp
GGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGT
TACGTGATAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGAT
AAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCC
TGTTGTGACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCA
TTCCGGTTGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATG
GAAGAGACCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGC
TATTAGTCGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATC
GACCAATTGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCT
GAACTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTTTCCAAGC
TC
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