FC931349

Overview
NameFC931349
Unique NameFC931349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:499..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.002e-36
Identity = 83/168 (49.40%), Postives = 114/168 (67.86%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMD-LKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  EA    D  KA ELR  ++  ++ ++  L  + +E +  E     +   VTE +I  IV  WTGIPV K+   E ++LLK+ + LH++VIGQD+AV+ +S A+ RAR G+K+P RPI SFIF GPTGVGK+ELAKALA   F SE+ MIR+DMSE+ME+H+VS+L
Sbjct:  487 ELEEAENNYDLNKAAELRHGKIPAVEKELLELEAENREKTAQEDRI--LQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLLKLADELHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRL 652          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.709e-36
Identity = 83/170 (48.82%), Postives = 112/170 (65.88%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E ++  R  D  KA E+      L  +I  L  +  E S AE ++     V   VT  DI  +VSAWTG+PV K+   ES++LL ME  + KR++GQ  AVKA+S A+RR+R G+ +PNRP  SF+F GPTGVGK+ELAKALA + F  E AM+R+DMSE+ME+H+VS+L
Sbjct:  486 EADKHTRDGDLAKASEI------LYGEIPELNKQLDEASAAEEDSQGKSMVSEEVTSDDIAEVVSAWTGVPVGKMLEGESEKLLDMENRIGKRLVGQQAAVKAVSDAVRRSRAGISDPNRPTGSFMFLGPTGVGKTELAKALADFLFDDETAMVRIDMSEYMEKHSVSRL 649          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.709e-36
Identity = 82/168 (48.81%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  EA    + EKA  LR  ++ +++ ++ A+ +K K       +   V   VTE  I  +V   TGIP+ K+   E ++LL + ETLH+RV+GQDEAV+A+S AI RAR G+++PNRP+ SF+F GPTGVGK+ELAKALA   F SEE M+R+DMSE+ME+H+VS+L
Sbjct:  487 ELEEAQNEGNLEKAAALRYGKIPEIEKELKAIEEKAKS-----DDLSLVQESVTEEQIAEVVGRMTGIPITKLVEGEREKLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRL 649          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.709e-36
Identity = 82/168 (48.81%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  EA    + EKA  LR  ++ +++ ++ A+ +K K       +   V   VTE  I  +V   TGIP+ K+   E ++LL + ETLH+RV+GQDEAV+A+S AI RAR G+++PNRP+ SF+F GPTGVGK+ELAKALA   F SEE M+R+DMSE+ME+H+VS+L
Sbjct:  487 ELEEAQNEGNLEKAAALRYGKIPEIEKELKAIEEKAKS-----DDLSLVQESVTEEQITEVVGRMTGIPITKLVEGEREKLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRL 649          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.709e-36
Identity = 80/173 (46.24%), Postives = 116/173 (67.05%), Query Frame = 2
Query:    8 NEAVRGQDFEKAGELRDREMD--------LKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            N+A R  D  K  EL+  +++        ++ QI AL   G+ + + + E         E DI  IV+ WT IPV+++   E  +LL++E  LH+RVIGQDEAV A++ AIRRAR G+K+P+RPI SF+F GPTGVGK+ELA+ALA   F +E+A+IR DMSE+ME++++S+L
Sbjct:  495 NQAEREHDLNKGAELKFGQLEALQQQRQAIEEQIQALHANGQTLLREQVE---------EADIAEIVARWTNIPVQRLLESERQKLLQLESFLHQRVIGQDEAVVAVAAAIRRARAGMKDPSRPIGSFLFLGPTGVGKTELARALANCLFDAEDALIRFDMSEYMEKNSISRL 658          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.916e-36
Identity = 84/171 (49.12%), Postives = 118/171 (69.01%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDVGPVVTEV---DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  E  R   F+K  EL+  ++ +L+A++ A      E    E+++G    + T+V   +I  +VS  TGIPV K+   E D+LL+ME+ LHKRV+GQDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H+V++L
Sbjct:  484 EMAELQRKGQFDKLAELQYGKLPELEARLKAA--DSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARL 652          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.916e-36
Identity = 84/171 (49.12%), Postives = 118/171 (69.01%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDVGPVVTEV---DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  E  R   F+K  EL+  ++ +L+A++ A      E    E+++G    + T+V   +I  +VS  TGIPV K+   E D+LL+ME+ LHKRV+GQDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H+V++L
Sbjct:  484 EMAELQRKGQFDKLAELQYGKLPELEARLKAA--DSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARL 652          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.916e-36
Identity = 84/171 (49.12%), Postives = 118/171 (69.01%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDVGPVVTEV---DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  E  R   F+K  EL+  ++ +L+A++ A      E    E+++G    + T+V   +I  +VS  TGIPV K+   E D+LL+ME+ LHKRV+GQDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H+V++L
Sbjct:  484 EMAELQRKGQFDKLAELQYGKLPELEARLKAA--DSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARL 652          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.808e-36
Identity = 83/168 (49.40%), Postives = 112/168 (66.67%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E  +A    D E+A  LR   +  L+ ++  L +K      A+     V   VTE +I  +V   TGIPV K+   E ++L+K+ ETLHKRVIGQDEAV A+S A+ R+R GL++PNRP+ SF+F GPTGVGK+ELAKALA   F SE+ M+R+DMSE+ME+H VS+L
Sbjct:  487 ELEDAENNYDLERAAVLRHGTIPQLEHELKELEEKN-----AKDNVKMVQESVTENEIAQVVGRLTGIPVTKLVEGEREKLMKLNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRL 649          
BLAST of FC931349 vs. ExPASy Swiss-Prot
Match: CLPB_PARUW (Chaperone protein clpB OS=Protochlamydia amoebophila (strain UWE25) GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.974e-36
Identity = 86/172 (50.00%), Postives = 113/172 (65.70%), Query Frame = 2
Query:    2 EKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGD-----VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 502
            E+  A R  D+ +  ELR    +L  Q+       KE+ +A+T+  +     +   V E  I  IVS WTGIPV K+   E++RLL +E  L KRV+GQ+ AV A+S AIRR+R GL +PNRP+  F+F GPTGVGK+ELAKALA   F  +EA+IRLDMSE+ME+HTVSKL
Sbjct:  485 EEEAAERKADYNRVAELR---YNLIPQLQ------KEIEEAQTQLNNKPNRLLQEEVDESLIAQIVSKWTGIPVHKMLEGEAERLLHLENELEKRVVGQEIAVSAVSEAIRRSRSGLSDPNRPMGVFLFLGPTGVGKTELAKALAFQLFNQDEALIRLDMSEYMEKHTVSKL 647          
The following BLAST results are available for this feature:
BLAST of FC931349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_LISMF1.002e-3649.40Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_PROFR1.709e-3648.82Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPB_LACLM1.709e-3648.81Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_LACLA1.709e-3648.81Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB2_SYNE71.709e-3646.24Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_BORPE2.916e-3649.12Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORPA2.916e-3649.12Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BORBR2.916e-3649.12Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_ENTFA3.808e-3649.40Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
CLPB_PARUW4.974e-3650.00Chaperone protein clpB OS=Protochlamydia amoebophi... [more]

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Properties
Property NameValue
Genbank descriptionC34104B08EF PostHarvP1 Citrus clementina cDNA clone C34104B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931349 ID=FC931349; Name=FC931349; organism=Citrus clementina; type=EST; length=502bp
GGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGT
TACGTGATAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGAT
AAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCC
TGTTGTGACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCA
TTCCGGTTGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATG
GAAGAGACCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGC
TATTAGTCGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATC
GACCAATTGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCT
GAACTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTTTCCAAGC
TC
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