FC931353

Overview
NameFC931353
Unique NameFC931353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 360
            + I+FT+TK  A +L+  L  +    ALHGDI QSQRE TLAGFR G F  LVAT+VAARGLD+ +V LII  E P + E ++HR+GRTGRAG  G A+++Y   +S +V  IERE G +F  +
Sbjct:  351 KCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTEL 474          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.783e-25
Identity = 64/133 (48.12%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIA 387
            + I+FT+TK  A +LA  +      +ALHGDI Q+QRE TL+GFR G+F  LVAT+VAARGLDI +V L+I  E P   E ++HRSGRT RAG  G A+++Y + +  +V  IE++ G KF  +   + AD A
Sbjct:  330 KCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTELPKIEVADEA 462          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHI 360
            + I+FT+TK  A +LA  L  +    ALHGDI Q+QRE TLAGFR G F  LVAT+VAARGLD+ +V L+I  E P + E ++HR+GRTGRAG  G A++++   +  +V  IE+E G +F  +
Sbjct:  363 KCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNEL 486          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 58/124 (46.77%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 360
            + I+FT+TK  A +L+  +  +   +ALHGDI Q+QRE TL GFR G F  L+AT+VAARGLDI +V L+I  E P   E ++HRSGRTGRAG  G A++++  ++S ++  +E + G KF  +
Sbjct:  344 KCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKFTEL 467          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324
            T+IF ETK  A QL D L      A A+HGD  QS+RE  LA FRSG    LVAT VAARGLDI +V  +I  + P DV+ Y+HR GRTGRAGNTG+A   ++   S++ K
Sbjct:  402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324
            T+IF ETK  A QL D L      A A+HGD  QS+RE  LA FRSG    LVAT VAARGLDI +V  +I  + P DV+ Y+HR GRTGRAGNTG+A   ++   S++ K
Sbjct:  402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324
            T+IF ETK  A QL D L      A A+HGD  Q++RE  LA FRSG+   LVAT VAARGLDI +V  +I  + P DV+ Y+HR GRTGRAGNTGVA   ++   +++ K
Sbjct:  405 TLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVK 515          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324
            TI+FTETK  A  LAD L      A A+HGD  Q +RE  LA F+SG+   LVAT VAARGLDI +V  +I  + P D++ Y+HR GRTGRAGN G+A   ++    ++ K
Sbjct:  435 TIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVK 545          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 1
Query:    7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNN 483
            I+F  TK    +LA+ L      A  +HGD+ Q++R V L  F+ G    LVAT+VAARGLDI+ V  +   + P+D E+Y+HR GRTGRAG TG+A+    PR KS +  IE+ +  K + +  P   +  +       E + T +S++ +  + +AA ELL +
Sbjct:  245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLED 409          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 57/111 (51.35%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324
            TIIFTETK  A  LAD L      A A+HGD  Q +RE  LA F+SG    LVAT VAARGLDI +V  +I  + P D++ Y+HR GRTGRAGN G+A   ++    +V K
Sbjct:  428 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVK 538          
The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH53_ARATH1.927e-2652.42DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH53_ORYSJ2.783e-2548.12DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH9_ARATH3.635e-2549.19DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH9_ORYSJ8.953e-2446.77DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
DED1_YEAST1.293e-2253.15ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_YEAS71.293e-2253.15ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_CANGA1.688e-2252.25ATP-dependent RNA helicase DED1 OS=Candida glabrat... [more]
DED1_LODEL1.094e-2149.55ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
CSHA_BACSU1.094e-2137.58DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
DED1_PICST1.429e-2151.35ATP-dependent RNA helicase DED1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionC34104B12EF PostHarvP1 Citrus clementina cDNA clone C34104B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bp
CGAACTATTATTTTCACCGAGACAAAGGAAAGTGCTTCTCAGCTTGCTGA
CTTGCTGCCTGGTGCACGGGCTTTACATGGGGACATACAGCAGTCTCAAC
GTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAGTTCATGACATTAGTT
GCCACAAATGTGGCGGCACGGGGTTTGGACATTAATGATGTGCAGTTAAT
TATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCTATATACATCGATCTG
GACGTACTGGAAGAGCAGGCAATACTGGAGTTGCTGTAATGCTTTATGAT
CCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGAATCTGGTGTGAAATT
TGAGCACATATCTGCTCCACAGCCAGCTGATATTGCCAAGGCTGCAGGTG
TGGAAGCTGCTGAAACAATAACCCAAGTTTCTGATAGTGTAATTCCCGCT
TTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTCTGGTCTATCAGCAGC
AGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAGGTTATACTGAGATAA
AGAGTAGATCACTTCTTAGTTCTTTGGAGGATCATGTTACAGTGGTTCTT
GAAGCAGGAAAGCCCATCTACACACCATCCTTTGCTTTTGGTGTCTTGAG
AAGATTCTTGCCTCGAGAAAAGTACAGTTAGTGAAGGGTATGGCTCTGAC
CGCTGATGGAATGGTG
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