FC931353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26 Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 360 + I+FT+TK A +L+ L + ALHGDI QSQRE TLAGFR G F LVAT+VAARGLD+ +V LII E P + E ++HR+GRTGRAG G A+++Y +S +V IERE G +F + Sbjct: 351 KCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTEL 474
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 2.783e-25 Identity = 64/133 (48.12%), Postives = 88/133 (66.17%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHISAPQPADIA 387 + I+FT+TK A +LA + +ALHGDI Q+QRE TL+GFR G+F LVAT+VAARGLDI +V L+I E P E ++HRSGRT RAG G A+++Y + + +V IE++ G KF + + AD A Sbjct: 330 KCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTELPKIEVADEA 462
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25 Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY-DPRKSSVSKIERESGVKFEHI 360 + I+FT+TK A +LA L + ALHGDI Q+QRE TLAGFR G F LVAT+VAARGLD+ +V L+I E P + E ++HR+GRTGRAG G A++++ + +V IE+E G +F + Sbjct: 363 KCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNEL 486
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24 Identity = 58/124 (46.77%), Postives = 84/124 (67.74%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGA---RALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHI 360 + I+FT+TK A +L+ + + +ALHGDI Q+QRE TL GFR G F L+AT+VAARGLDI +V L+I E P E ++HRSGRTGRAG G A++++ ++S ++ +E + G KF + Sbjct: 344 KCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKFTEL 467
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22 Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324 T+IF ETK A QL D L A A+HGD QS+RE LA FRSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S++ K Sbjct: 402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22 Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324 T+IF ETK A QL D L A A+HGD QS+RE LA FRSG LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTG+A ++ S++ K Sbjct: 402 TLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVK 512
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22 Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324 T+IF ETK A QL D L A A+HGD Q++RE LA FRSG+ LVAT VAARGLDI +V +I + P DV+ Y+HR GRTGRAGNTGVA ++ +++ K Sbjct: 405 TLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNNNIVK 515
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21 Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324 TI+FTETK A LAD L A A+HGD Q +RE LA F+SG+ LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAGN G+A ++ ++ K Sbjct: 435 TIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVK 545
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21 Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 1 Query: 7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-KSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNN 483 I+F TK +LA+ L A +HGD+ Q++R V L F+ G LVAT+VAARGLDI+ V + + P+D E+Y+HR GRTGRAG TG+A+ PR KS + IE+ + K + + P + + E + T +S++ + + +AA ELL + Sbjct: 245 IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLED 409
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21 Identity = 57/111 (51.35%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324 TIIFTETK A LAD L A A+HGD Q +RE LA F+SG LVAT VAARGLDI +V +I + P D++ Y+HR GRTGRAGN G+A ++ +V K Sbjct: 428 TIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVK 538 The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bpback to top |