FC931353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1 Query: 7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 288 IIF T +L+ L GA LHG + QS R L FRS LVAT+VAARGLDI V +++ + P D + +IHR GRT RAG +GVA+ Sbjct: 296 IIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: MAK5_ASPCL (ATP-dependent RNA helicase mak5 OS=Aspergillus clavatus GN=mak5 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS---GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 303 RT++FT + + +LA LL A ALH + Q R ++ F S L+AT+VAARGLDI + L+I PR + Y+HRSGRT RAG +G +V++ P Sbjct: 505 RTLVFTNSISAVRRLAQLLQALQLPALALHSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHRSGRTARAGASGKSVIICGP 612
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: HAS1_ASPTN (ATP-dependent RNA helicase has1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=has1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 50/130 (38.46%), Postives = 66/130 (50.77%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA--GNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQ 372 + IIF + + ADLL ALHG ++Q R F + TL+ T+VAARGLDI V IIQ +PP + +AYIHR GRT R G G ++ML P + + RE+ V PQ Sbjct: 347 KIIIFFSSCNAVKYYADLLNYIDLPVLALHGKLKQQTRTQRFFEFCNATQGTLICTDVAARGLDIPAVDYIIQFDPPDEPKAYIHRVGRTARGTKGKIGRSIMLLQPSEVGFLNVLREARVPVVEFEFPQ 476
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 1 Query: 7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 297 +IFT++KE A L L +H + Q QR+ + FR GK L+ T + ARG+D V +I + P + +YIHR GRTGRAG GVA LY Sbjct: 444 LIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLY 544
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DBP3_ASPOR (ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae GN=dbp3 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 73 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 297 +HGD+ Q +R +L F++G LVAT+VAARGLDI V+ +I P VE Y+HR GRTGRAG G AV L+ Sbjct: 363 IHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLF 437
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13 Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 1 Query: 7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML---YDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 474 I+FT T + +L+ LL A LHG + Q R L F++G LVAT+VA+RGLDI V L++ + P + + YIHR GRT RAG +G +V L YD + +IE G+K + + G E + +S+ V A ++A EL Sbjct: 347 IVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYD--VELLQRIEAVIGLK-----------MTEFPGGNDKEAVMLLSERVAEAHRAAVREL 496
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13 Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 1 Query: 7 IIFTETKESASQLAD--LLPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIE 330 ++F E K + + LL G A A+HG +R+ F++ + LVAT+VA++GLDI D+Q +I + P ++E Y+HR GRTGR G TGVA + ++ + ++ Sbjct: 428 LVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINKNQTETTLLD 539
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13 Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV-MLYDPRKSSVSKIERESGVKFEHISAPQPADI 384 + IIF T++ L + + + ++HGD +Q +R+ + FRS K L+A++V ARG+D+ V +I + P + E YIHR GR GR G GVA+ + + IER G K + PAD+ Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREM----PADL 391
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13 Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV-MLYDPRKSSVSKIERESGVKFEHISAPQPADI 384 + +IF T+ L + L A+H D+ Q++R+ + FRSG L++T++ ARG+D+ V L+I + P + E YIHR GR GR G GVA+ + D + +IE+ + E + PADI Sbjct: 264 QAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEM----PADI 392
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13 Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 1 Query: 7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324 ++FT+TK+ A ++ LL LHG++ Q+QR L F+ + LVAT+VAARGLDI V+ +I P V+ Y+HR GRT RAG G +V L + + K Sbjct: 433 MLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542 The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bpback to top |