FC931353

Overview
NameFC931353
Unique NameFC931353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 288
            IIF  T     +L+  L     GA  LHG + QS R   L  FRS     LVAT+VAARGLDI  V +++  + P D + +IHR GRT RAG +GVA+
Sbjct:  296 IIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: MAK5_ASPCL (ATP-dependent RNA helicase mak5 OS=Aspergillus clavatus GN=mak5 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRS---GKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 303
            RT++FT +  +  +LA LL      A ALH  + Q  R  ++  F S        L+AT+VAARGLDI  + L+I    PR  + Y+HRSGRT RAG +G +V++  P
Sbjct:  505 RTLVFTNSISAVRRLAQLLQALQLPALALHSSMAQKARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHRSGRTARAGASGKSVIICGP 612          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: HAS1_ASPTN (ATP-dependent RNA helicase has1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=has1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/130 (38.46%), Postives = 66/130 (50.77%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA--GNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQ 372
            + IIF  +  +    ADLL        ALHG ++Q  R      F +    TL+ T+VAARGLDI  V  IIQ +PP + +AYIHR GRT R   G  G ++ML  P +     + RE+ V       PQ
Sbjct:  347 KIIIFFSSCNAVKYYADLLNYIDLPVLALHGKLKQQTRTQRFFEFCNATQGTLICTDVAARGLDIPAVDYIIQFDPPDEPKAYIHRVGRTARGTKGKIGRSIMLLQPSEVGFLNVLREARVPVVEFEFPQ 476          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX52_DICDI (Probable ATP-dependent RNA helicase ddx52 OS=Dictyostelium discoideum GN=ddx52 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 297
            +IFT++KE A  L   L         +H +  Q QR+  +  FR GK   L+ T + ARG+D   V  +I  + P  + +YIHR GRTGRAG  GVA  LY
Sbjct:  444 LIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLY 544          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DBP3_ASPOR (ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae GN=dbp3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   73 LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 297
            +HGD+ Q +R  +L  F++G    LVAT+VAARGLDI  V+ +I    P  VE Y+HR GRTGRAG  G AV L+
Sbjct:  363 IHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLF 437          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 1
Query:    7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML---YDPRKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 474
            I+FT T   + +L+ LL      A  LHG + Q  R   L  F++G    LVAT+VA+RGLDI  V L++  + P + + YIHR GRT RAG +G +V L   YD     + +IE   G+K           + +  G    E +  +S+ V  A ++A  EL
Sbjct:  347 IVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYD--VELLQRIEAVIGLK-----------MTEFPGGNDKEAVMLLSERVAEAHRAAVREL 496          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    7 IIFTETKESASQLAD--LLPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIE 330
            ++F E K     + +  LL G  A A+HG     +R+     F++ +   LVAT+VA++GLDI D+Q +I  + P ++E Y+HR GRTGR G TGVA    +  ++  + ++
Sbjct:  428 LVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINKNQTETTLLD 539          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV-MLYDPRKSSVSKIERESGVKFEHISAPQPADI 384
            + IIF  T++    L + +  +     ++HGD +Q +R+  +  FRS K   L+A++V ARG+D+  V  +I  + P + E YIHR GR GR G  GVA+  +       +  IER  G K   +    PAD+
Sbjct:  263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREM----PADL 391          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV-MLYDPRKSSVSKIERESGVKFEHISAPQPADI 384
            + +IF  T+     L + L        A+H D+ Q++R+  +  FRSG    L++T++ ARG+D+  V L+I  + P + E YIHR GR GR G  GVA+  + D     + +IE+    + E +    PADI
Sbjct:  264 QAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEM----PADI 392          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    7 IIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324
            ++FT+TK+ A ++  LL         LHG++ Q+QR   L  F+  +   LVAT+VAARGLDI  V+ +I    P  V+ Y+HR GRT RAG  G +V L    +  + K
Sbjct:  433 MLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLK 542          
The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_ASPOR3.192e-1345.92ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
MAK5_ASPCL3.192e-1340.74ATP-dependent RNA helicase mak5 OS=Aspergillus cla... [more]
HAS1_ASPTN3.192e-1338.46ATP-dependent RNA helicase has1 OS=Aspergillus ter... [more]
DDX52_DICDI3.192e-1340.59Probable ATP-dependent RNA helicase ddx52 OS=Dicty... [more]
DBP3_ASPOR3.192e-1352.00ATP-dependent RNA helicase dbp3 OS=Aspergillus ory... [more]
RRP3_USTMA4.168e-1334.97ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]
RH35B_ORYSJ4.168e-1335.71DEAD-box ATP-dependent RNA helicase 35B OS=Oryza s... [more]
RH34_ARATH4.168e-1333.83DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
IF4A_CANAL4.168e-1333.83ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
DDX27_MOUSE4.168e-1340.00Probable ATP-dependent RNA helicase DDX27 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC34104B12EF PostHarvP1 Citrus clementina cDNA clone C34104B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bp
CGAACTATTATTTTCACCGAGACAAAGGAAAGTGCTTCTCAGCTTGCTGA
CTTGCTGCCTGGTGCACGGGCTTTACATGGGGACATACAGCAGTCTCAAC
GTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAGTTCATGACATTAGTT
GCCACAAATGTGGCGGCACGGGGTTTGGACATTAATGATGTGCAGTTAAT
TATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCTATATACATCGATCTG
GACGTACTGGAAGAGCAGGCAATACTGGAGTTGCTGTAATGCTTTATGAT
CCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGAATCTGGTGTGAAATT
TGAGCACATATCTGCTCCACAGCCAGCTGATATTGCCAAGGCTGCAGGTG
TGGAAGCTGCTGAAACAATAACCCAAGTTTCTGATAGTGTAATTCCCGCT
TTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTCTGGTCTATCAGCAGC
AGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAGGTTATACTGAGATAA
AGAGTAGATCACTTCTTAGTTCTTTGGAGGATCATGTTACAGTGGTTCTT
GAAGCAGGAAAGCCCATCTACACACCATCCTTTGCTTTTGGTGTCTTGAG
AAGATTCTTGCCTCGAGAAAAGTACAGTTAGTGAAGGGTATGGCTCTGAC
CGCTGATGGAATGGTG
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