FC931353

Overview
NameFC931353
Unique NameFC931353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    7 IIFTETKESASQLADLLP--GAR--ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR 306
            IIF    ++A  L  LL   G R  +LH  + QS+R   LA FR+     LVAT+VAARGLDI  V L++  + PR+ + YIHR GRT RAG  G A+ L   R
Sbjct:  365 IIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLARFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVGQR 468          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DBP8_ASPCL (ATP-dependent RNA helicase dbp8 OS=Aspergillus clavatus GN=dbp8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1
Query:    7 IIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK-SSVSKIERESGVKFEHIS 363
            IIF    ++A  L  +L        +LH  + QS+R   LA FR+     LVAT+VA+RGLDI  V L++  + PR+ + Y+HR GRT RAG +G +V L   R    V  IE   G + E  S
Sbjct:  352 IIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGRTARAGRSGESVTLVGQRDVQLVLAIEARVGRQMEEWS 475          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: SPB4_DEBHA (ATP-dependent rRNA helicase SPB4 OS=Debaryomyces hansenii GN=SPB4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   70 ALHGDIQQSQREVTLAGFRSGKFM----TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY--DPRKSSVSKIERESGVKFEHISAPQPADI 384
            +LHG +    R  TL  F  G  M     L+ T+VAARG+DI DV L+IQ +PP D + + HRSGRTGRA   G A+++   + R+          G+   ++  P  + I
Sbjct:  309 SLHGQLSTKPRLKTLQNFSEGDSMLHKHVLLTTDVAARGIDIPDVDLVIQLDPPTDPDVFFHRSGRTGRANKVGQAIVMLNNNSREEDYVNFMEVKGMTMSNMECPNISKI 419          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: MAK5_LODEL (ATP-dependent RNA helicase MAK5 OS=Lodderomyces elongisporus GN=MAK5 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG----KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 315
            T++F  + +S  +L  LL      A A+H  + Q QR  +L  F+      +   LVA++VAARGLDI ++  +     PR  + YIHRSGRT RAG  GV+VM   P+++S
Sbjct:  527 TLVFANSIDSVKRLVPLLNNLNIPAFAIHSSMIQKQRLRSLERFKDASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMFCSPQEAS 638          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: MAK5_CANAL (ATP-dependent RNA helicase MAK5 OS=Candida albicans GN=MAK5 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 58/188 (30.85%), Postives = 88/188 (46.81%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSG----KFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS----------------VSKIERESGVKFEHIS-------APQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEEL 474
            T++F  + +S  +L  LL      A ++H  + Q QR   L  F+      +   LVA++VAARGLDI ++  ++    PR  + YIHRSGRT RAG  GV+ M   P+++S                 S++   + VK   I         P+    +K A    + T T+  DS +   K AAE+L
Sbjct:  490 TLVFANSIDSVKRLVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSAMFCSPQEASGPLRKLRRLVAGNSNKESRLNMHNDVKLLPIEMDLVSQIKPRVEISSKLADASISSTATRKEDSWV---KQAAEDL 674          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 288
            + +IF  T+    +L + L        A++ D+QQ +R+  +  FRSG    L++T++ ARG+D+  V L+I  + P + E YIHR GR GR G  G+A+
Sbjct:  263 QAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAI 362          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 288
            + +IF  TK+    L   +        ++HGD+ Q  R+  +  FRSG+   L++T+V ARG+D+  V L+I  + P + E YIHR GR+GR G  GVA+
Sbjct:  265 QAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAI 364          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DRS1_SCLS1 (ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=drs1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 48/124 (38.71%), Postives = 68/124 (54.84%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADL--LPGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA-VMLYDPRKSSVS---KIERESGVK 348
            R I+F   K+ A +   +  L G +A  LHG + Q QR  ++  FR GK   L+AT++A+RGLDI  V  +I  E P+  + Y+HR GRT RAG +G A  +  +P +  V    K  R  G K
Sbjct:  515 RVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGAK 638          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADL--LPGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA-VMLYDPRKSSVS---KIERESGVKF-EHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEE 471
            R I+F   K+ A +   +  L G +A  LHG + Q QR   +  FR GK   L+AT++A+RGLDI  V+ +I  E P+  E Y+HR GRT RAG +G A  +  +P +  V    K  R  G K    +  P  AD       E A  + ++   +    K   EE
Sbjct:  566 RVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGRAQGAKIVSRVVDPAVAD-------EWASKVEEMQAEIEDILKEEKEE 724          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 48/124 (38.71%), Postives = 68/124 (54.84%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADL--LPGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVA-VMLYDPRKSSVS---KIERESGVK 348
            R I+F   K+ A +   +  L G +A  LHG + Q QR  ++  FR GK   L+AT++A+RGLDI  V  +I  E P+  + Y+HR GRT RAG +G A  +  +P +  V    K  R  G K
Sbjct:  515 RVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASRTQGAK 638          
The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_COCIM5.444e-1346.15ATP-dependent RNA helicase DBP8 OS=Coccidioides im... [more]
DBP8_ASPCL5.444e-1339.52ATP-dependent RNA helicase dbp8 OS=Aspergillus cla... [more]
SPB4_DEBHA7.110e-1336.94ATP-dependent rRNA helicase SPB4 OS=Debaryomyces h... [more]
MAK5_LODEL7.110e-1339.29ATP-dependent RNA helicase MAK5 OS=Lodderomyces el... [more]
MAK5_CANAL7.110e-1330.85ATP-dependent RNA helicase MAK5 OS=Candida albican... [more]
IF4A_KLULA7.110e-1336.00ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
FAL1_YARLI7.110e-1338.00ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
DRS1_SCLS17.110e-1338.71ATP-dependent RNA helicase drs1 OS=Sclerotinia scl... [more]
DRS1_COCIM7.110e-1334.34ATP-dependent RNA helicase DRS1 OS=Coccidioides im... [more]
DRS1_BOTFB7.110e-1338.71ATP-dependent RNA helicase drs1 OS=Botryotinia fuc... [more]

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Properties
Property NameValue
Genbank descriptionC34104B12EF PostHarvP1 Citrus clementina cDNA clone C34104B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bp
CGAACTATTATTTTCACCGAGACAAAGGAAAGTGCTTCTCAGCTTGCTGA
CTTGCTGCCTGGTGCACGGGCTTTACATGGGGACATACAGCAGTCTCAAC
GTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAGTTCATGACATTAGTT
GCCACAAATGTGGCGGCACGGGGTTTGGACATTAATGATGTGCAGTTAAT
TATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCTATATACATCGATCTG
GACGTACTGGAAGAGCAGGCAATACTGGAGTTGCTGTAATGCTTTATGAT
CCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGAATCTGGTGTGAAATT
TGAGCACATATCTGCTCCACAGCCAGCTGATATTGCCAAGGCTGCAGGTG
TGGAAGCTGCTGAAACAATAACCCAAGTTTCTGATAGTGTAATTCCCGCT
TTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTCTGGTCTATCAGCAGC
AGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAGGTTATACTGAGATAA
AGAGTAGATCACTTCTTAGTTCTTTGGAGGATCATGTTACAGTGGTTCTT
GAAGCAGGAAAGCCCATCTACACACCATCCTTTGCTTTTGGTGTCTTGAG
AAGATTCTTGCCTCGAGAAAAGTACAGTTAGTGAAGGGTATGGCTCTGAC
CGCTGATGGAATGGTG
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