FC931353

Overview
NameFC931353
Unique NameFC931353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 53/150 (35.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 438
            TIIF  TK +  +++++L      + AL+GD+ QS RE TL   + G+   L+AT+VAARGLD++ +  +I  + P D E+Y+HR GRTGRAG  G A++  + R+  + + IER   +    ++ P+   ++K    + A+ +    DS
Sbjct:  247 TIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDS 396          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300
            T+IF ETK  A  L+D L     GA ++HGD  Q +RE  L  FRSGK   +VAT VAARGLDI +V  ++  + P DV+ Y+HR GRTGRAGN G A   ++
Sbjct:  453 TLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFN 555          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300
            T+IF ETK  A  L+D L      A ++HGD  Q +RE  L  FR+G+   LVAT VAARGLDI +V+ ++  + P D++ Y+HR GRTGRAGNTG++   ++
Sbjct:  448 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFN 550          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_YARLI (ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica GN=DED1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQ 372
            T++F ETK  A  L D+L      A ++HGD  Q  RE  L  FR G    LVAT VAARGLDI +V  ++  + P D++ Y+HR GRTGRAGNTG+A   ++     + + E    +K  H   PQ
Sbjct:  421 TLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGIVR-ELIDILKEAHQDVPQ 546          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_AJECN (ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DED1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 312
            T++F ETK  A  L+D L   R    A+HGD  Q +RE  L  FR+G+   LVAT VAARGLDI +V  +I  + P +++ Y+HR GRTGRAGNTG++   +   K+
Sbjct:  464 TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKN 570          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 312
            + IIF  TK+   QL+  L    GA A+HGD  Q +R+  L+ FR+G+   LVAT+VAARGLDI D++++I  + P  +E Y+HR GRTGRAG +G+A   +  + S
Sbjct:  392 KIIIFCSTKKMCDQLSRNLTRNFGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDS 498          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300
            T+IF ETK  A  L+D L      A ++HGD  Q +RE  L  FR+G+   LVAT VAARGLDI +V  ++  + P D++ Y+HR GRTGRAGNTG++   ++
Sbjct:  448 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFN 550          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX4_RAT (Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus GN=Ddx4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300
            R ++F ETK+ A  +A  L   +    ++HGD +Q +RE  L  FR GK   LVAT+VAARGLDI +VQ +I    P  ++ Y+HR GRTGR GNTG A+  +D
Sbjct:  527 RPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324
            T++F ETK  A  L + L      A ++HGD  Q +REV L  F+SG+   LVAT+VAARGLDI  V  ++  + P D++ Y+HR GRTGRAG +G+A   ++   +S+++
Sbjct:  421 TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLAR 531          
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX4_XENLA (Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 318
            RT+IF  TK+ A  +A  L      + ++HGD +Q QRE  L  FR+GK   +V T VAARGLDI +VQ +I  + P++V+ Y+HR GRTGR GNTG A   ++ +   V
Sbjct:  528 RTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV 637          
The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DEAD_BUCBP2.980e-1935.33Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DED1_USTMA3.892e-1950.49ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
DED1_BOTFB3.892e-1947.57ATP-dependent RNA helicase ded1 OS=Botryotinia fuc... [more]
DED1_YARLI5.084e-1942.52ATP-dependent RNA helicase DED1 OS=Yarrowia lipoly... [more]
DED1_AJECN5.084e-1946.73ATP-dependent RNA helicase DED1 OS=Ajellomyces cap... [more]
DB10_NICSY5.084e-1945.79ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
DED1_SCLS16.639e-1947.57ATP-dependent RNA helicase ded1 OS=Sclerotinia scl... [more]
DDX4_RAT6.639e-1947.12Probable ATP-dependent RNA helicase DDX4 OS=Rattus... [more]
RH37_ARATH8.671e-1943.24DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
DDX4_XENLA8.671e-1945.45Probable ATP-dependent RNA helicase DDX4 OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionC34104B12EF PostHarvP1 Citrus clementina cDNA clone C34104B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bp
CGAACTATTATTTTCACCGAGACAAAGGAAAGTGCTTCTCAGCTTGCTGA
CTTGCTGCCTGGTGCACGGGCTTTACATGGGGACATACAGCAGTCTCAAC
GTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAGTTCATGACATTAGTT
GCCACAAATGTGGCGGCACGGGGTTTGGACATTAATGATGTGCAGTTAAT
TATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCTATATACATCGATCTG
GACGTACTGGAAGAGCAGGCAATACTGGAGTTGCTGTAATGCTTTATGAT
CCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGAATCTGGTGTGAAATT
TGAGCACATATCTGCTCCACAGCCAGCTGATATTGCCAAGGCTGCAGGTG
TGGAAGCTGCTGAAACAATAACCCAAGTTTCTGATAGTGTAATTCCCGCT
TTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTCTGGTCTATCAGCAGC
AGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAGGTTATACTGAGATAA
AGAGTAGATCACTTCTTAGTTCTTTGGAGGATCATGTTACAGTGGTTCTT
GAAGCAGGAAAGCCCATCTACACACCATCCTTTGCTTTTGGTGTCTTGAG
AAGATTCTTGCCTCGAGAAAAGTACAGTTAGTGAAGGGTATGGCTCTGAC
CGCTGATGGAATGGTG
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