FC931353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19 Identity = 53/150 (35.33%), Postives = 88/150 (58.67%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDS 438 TIIF TK + +++++L + AL+GD+ QS RE TL + G+ L+AT+VAARGLD++ + +I + P D E+Y+HR GRTGRAG G A++ + R+ + + IER + ++ P+ ++K + A+ + DS Sbjct: 247 TIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDS 396
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19 Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300 T+IF ETK A L+D L GA ++HGD Q +RE L FRSGK +VAT VAARGLDI +V ++ + P DV+ Y+HR GRTGRAGN G A ++ Sbjct: 453 TLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFN 555
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19 Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300 T+IF ETK A L+D L A ++HGD Q +RE L FR+G+ LVAT VAARGLDI +V+ ++ + P D++ Y+HR GRTGRAGNTG++ ++ Sbjct: 448 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFN 550
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_YARLI (ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica GN=DED1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19 Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQ 372 T++F ETK A L D+L A ++HGD Q RE L FR G LVAT VAARGLDI +V ++ + P D++ Y+HR GRTGRAGNTG+A ++ + + E +K H PQ Sbjct: 421 TLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGIVR-ELIDILKEAHQDVPQ 546
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_AJECN (ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DED1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19 Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 312 T++F ETK A L+D L R A+HGD Q +RE L FR+G+ LVAT VAARGLDI +V +I + P +++ Y+HR GRTGRAGNTG++ + K+ Sbjct: 464 TLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKN 570
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19 Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS 312 + IIF TK+ QL+ L GA A+HGD Q +R+ L+ FR+G+ LVAT+VAARGLDI D++++I + P +E Y+HR GRTGRAG +G+A + + S Sbjct: 392 KIIIFCSTKKMCDQLSRNLTRNFGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDS 498
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19 Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300 T+IF ETK A L+D L A ++HGD Q +RE L FR+G+ LVAT VAARGLDI +V ++ + P D++ Y+HR GRTGRAGNTG++ ++ Sbjct: 448 TLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFN 550
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX4_RAT (Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus GN=Ddx4 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19 Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 300 R ++F ETK+ A +A L + ++HGD +Q +RE L FR GK LVAT+VAARGLDI +VQ +I P ++ Y+HR GRTGR GNTG A+ +D Sbjct: 527 RPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 4 TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 324 T++F ETK A L + L A ++HGD Q +REV L F+SG+ LVAT+VAARGLDI V ++ + P D++ Y+HR GRTGRAG +G+A ++ +S+++ Sbjct: 421 TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLAR 531
BLAST of FC931353 vs. ExPASy Swiss-Prot
Match: DDX4_XENLA (Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19 Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1 Query: 1 RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 318 RT+IF TK+ A +A L + ++HGD +Q QRE L FR+GK +V T VAARGLDI +VQ +I + P++V+ Y+HR GRTGR GNTG A ++ + V Sbjct: 528 RTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV 637 The following BLAST results are available for this feature:
BLAST of FC931353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931353 ID=FC931353; Name=FC931353; organism=Citrus clementina; type=EST; length=716bpback to top |